Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,725,239 2 bp→AA 100% intergenic (‑71/‑457) U712_19205 ← / → U712_19210 Uncharacterized protein ywcI/Minor extracellular protease vpr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,725,2390GA100.0% 176.4 / ‑6.6 57intergenic (‑71/‑458)U712_19205/U712_19210Uncharacterized protein ywcI/Minor extracellular protease vpr
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (37/19);  minor base C (1/0);  total (38/19)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
*CP0068813,725,2400GA100.0% 166.5 / NA 57intergenic (‑72/‑457)U712_19205/U712_19210Uncharacterized protein ywcI/Minor extracellular protease vpr
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (38/19);  total (38/19)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAACTAGTTTTTAGAAGTTT  >  CP006881/3725116‑3725369
                                                                                                                                  ||                                                                                                                                 
cAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTTGCAGGCCGCCTTTTTAGCAGCCCGTTTTATAAGCCGCCGCCCGCAAGAAAAGACGGCCg                                                                                                                      >  5:61889/1‑139 (MQ=255)
   ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtt                                                                                                                   >  8:257671/1‑139 (MQ=255)
       tcaAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCGTTTTATCAGCCCGGTTTCTCATCCGCAGCCCGCAAGAAAAGACGGCAGAgttctt                                                                                                               >  3:216001/1‑139 (MQ=255)
        caAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtttagtt                                                                                                              >  5:75339/1‑135 (MQ=255)
           aaaGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtttcttttct                                                                                                           >  7:251906/1‑139 (MQ=255)
               aCCATCAACACCCGAAACGATACAAGAAAACTTTTCATAGAAAAACATCCCTCCGCTTGTTTTTGGCAGGCAGCCTTTTTCGCAGCCGGTTTTCACAGCCGCCCCCCGCAACAAAAGACGGCCGATTTCTTTTCTCGCa                                                                                                       <  7:257671/139‑1 (MQ=255)
                  aTCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCACGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCACCCCCCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAAc                                                                                                    >  4:143474/1‑139 (MQ=255)
                     caccCCCGTAACGATACACGCAAACGTTTCATACAAAAACAGCCCGCCGCTTCTTTTGGGCCGGCCGCCTTTTTAGCCGCCCGTTTTCGCAGCCGCCGCCCGCAAGAAACGACGGCCGATTTCTTTTCTCGCAAACTAg                                                                                                 <  5:170300/139‑1 (MQ=255)
                       cacCCGTAAAGATACAAGCAAACGTGTCATAGAAAAACCTCCCTCCGCTTCGTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGCAACGACGGCCGATGTATTTTCGCGCAAACTAGCg                                                                                               >  4:353614/1‑139 (MQ=255)
                            gTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGGAAACTAGCGGctct                                                                                          >  6:391037/1‑139 (MQ=255)
                            gTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTAAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                                                           >  8:47837/1‑138 (MQ=255)
                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                                                           >  8:141297/1‑137 (MQ=255)
                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                                                           >  1:54496/1‑137 (MQ=255)
                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                                                           >  1:215999/1‑137 (MQ=255)
                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCCCCGCGTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGGTTTCTCAGCCGCCGCCCGCAAGAAAAGACGGCCGAGTTCATTTCTCGCAAACAAGCGGctc                                                                                           >  1:79504/1‑137 (MQ=255)
                               aactaaCAAGAAATCGTTTCATAGAAAAACTTCCCTCGGTGTGTTTTTGCCCGGCCGCTTTTTATGCAGCCGGTTTGCTCAGCCCCCGCCCGAAAAAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAg                                                                                        <  2:107167/133‑1 (MQ=255)
                                aGATACAACCAAACTTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGCTTTTTTAGCCGCCGGTTTTCTCCCCCGCCGCCGGAAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                                                      <  7:88928/139‑1 (MQ=255)
                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCCGCCCGCAAGAAAAGACGGCCGATTTCGTTTCTCGCAAACTAGCGGCTCTAGCAAAAc                                                                                  >  7:10708/1‑139 (MQ=255)
                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc                                                                                  >  3:141809/1‑139 (MQ=255)
                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCAAGCaaaa                                                                                   >  8:88928/1‑138 (MQ=255)
                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAAATAGCGGCTCAAGCAAAAc                                                                                  >  3:126785/1‑139 (MQ=255)
                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCAAGCTAGCGGCGCGAGCACAAc                                                                                  >  6:150847/1‑139 (MQ=255)
                                      aaGCAAACGTTTCATAGAAAAACCTCCCAACGCGTCGTTTTGGCAGGCCCCCATTTTTTCAGCCCCGTTTATACGCCGCCGCCCCCCAGAAAAACCCGCCCAATTATTTTAACCCAAACGAGCCGCACTAGCcaaaaa                                                                                 >  2:18345/1‑136 (MQ=255)
                                      aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACt                                                                                 >  2:256650/1‑138 (MQ=255)
                                      aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCGGCTCTAGCAAAACt                                                                                 >  3:147980/1‑138 (MQ=255)
                                       cccAAACGTTTAATATAAAAACATCACTCCGGTTTTTTTTGGCCGCCCCTTTTTTTAGCCCCCCTTTTTCACCCCCCCCCCCCCAAACAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa                                                                               <  4:275910/137‑1 (MQ=255)
                                        gCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCCGCCCGTTTTCGCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  7:224776/139‑1 (MQ=255)
                                        ccAACCGTTTCATACAAAAACACCCCTCCGCTTCTTTTGGCCCGGCAGCCTTTTTACCACCCCGTTTTCCCCGCCCCCGCCCCCAACAAAACACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  8:199403/138‑1 (MQ=255)
                                        ccAAACTTTTCATCTAAAAAAACCCCTCCGATTCTTTTTGCCAGGCCGCCTTTTTCCCCGCCCGTTTTCTCAGCCGCAGCCCCAAACAAACCACGGCCGATTTATTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  3:360237/138‑1 (MQ=255)
                                        ccAAACTTTTAATATAAAAACAACCCGCCGCTTATTTTTGCCGGGCCGCGTTTTACCCAGCCGGTTTTCTCCGCCCCCCCCCCCAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  4:141809/138‑1 (MQ=255)
                                        ccAAACGTTTCATACAAAAACAGCCCGCCGCTTCTTTTTGGCCGGCAGCCTTTTTAGCAGCCCGTTTGCTCACCCGCCCCCCCCAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  7:256564/138‑1 (MQ=255)
                                        ccAAACGTTTAATACAAAAACACCCCTCCGCTTTTTTTTGGCCGCCAGCGTTTTTAGCCCCCCGTTTTCTCCCCCGCCCCCCCAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  5:370053/138‑1 (MQ=255)
                                        ccAAACGTTCCAAAGAAAAACATCCCTCCGCTTCTTTTTGGCTGGATGCTTTTTTAGCCGCCGGTTTTCTCAGCCGCCCCCCGAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                                                              <  7:291731/138‑1 (MQ=255)
                                          aaccGTTTCATATAAAAACATCCCTCCGCTTATTTTTGGCAGCCCGATTTTTTAGCACCCGTTTTTCTCACCCGCAGCCCTAAACAAACCACGGCCGATTTCTTTTGTCGCAAACTAGCGGCTCTAGCAAAACTCATGa                                                                            <  4:147980/136‑1 (MQ=255)
                                           aaCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCGGCTCTAGAAAAACTCATTAc                                                                           >  1:134789/1‑139 (MQ=255)
                                            aggTTTAATAAAAAAACATCCCTCGTTTTTTTTTTGGCCGGCAGCTTTTTTCGCACCCGTTTTACTCCCCCCCCGCCCCAAAAAAACCACGGCCGATTTCTTTTCTCGAAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                          <  4:158151/137‑1 (MQ=255)
                                            aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTATTTTCTCGCAAACTAGCGGCTCGAGCAAAAAGCATGAcg                                                                          >  3:11818/1‑138 (MQ=255)
                                            aCGTTTCATAGAAAAACATCCCTCCGCTGCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCGCCGCCCCAGCCCGCAACAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                          <  7:66908/139‑1 (MQ=255)
                                            aCGTTTCATACAAAAACATCCCTCCGCTTATTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCACACCCGCAGCCCGCAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                          <  1:256650/139‑1 (MQ=255)
                                            aCGTTTCATACAAAAACACCCCGCCGCTGCTTTTTGGCCGCCAGCCTTTTTCGCAGCCCGTTTTCTACCCCGCACCCCGCAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                          <  7:47837/139‑1 (MQ=255)
                                            aCGTTTAATACAAAAACACCCCTCCGTTTGTTTTTGCCCGCACGCCTTTTTCGCAGCCGTTTTTCTCTGCCGCCGCCCGAAATAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                                                          <  8:251906/139‑1 (MQ=255)
                                                 tCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCGAGCAAAACTCATGCCTCGAt                                                                      >  5:22612/1‑138 (MQ=255)
                                                  cATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGCTTTATTTTATCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGa                                                                    >  5:329831/1‑139 (MQ=255)
                                                   caccaaaaaCATCCCTCCGCTTCTTTTTGGCCGCCAGCCTTTTAAGCCCCCGTTTTTCACACCCCCACCCCGCAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGAt                                                                   <  6:305581/135‑1 (MQ=255)
                                                       aaaaaCATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAc                                                               >  5:333614/1‑139 (MQ=255)
                                                       aaaaaCATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAc                                                               >  2:290193/1‑139 (MQ=255)
                                                       aaaaaCATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAACACGGCCGCTTTCTTTTATCGCAAACAAGCGGCTCTAGCAAAACTCATGACGCGATGATAGAc                                                               >  7:315088/1‑139 (MQ=255)
                                                         aaaCATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAACCTCATGACTGTATGATAGACCg                                                             >  8:8881/1‑139 (MQ=255)
                                                                 cTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGaaa                                                       >  7:241909/1‑137 (MQ=255)
                                                                 cTCCGCGTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTAAGCCGCAGCCCCCAAGAAAAGACGCCCGATTTATTTTATCGCAAAATAGCGGCTATAGGAAAACTAATTACTCTAAGATATACCGTGGAAag                                                      >  6:134157/1‑138 (MQ=255)
                                                                                   ggcagCCTTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCGGCTCTAGCAAAACTCATTACTATATGATTGCCACTGGAAAGAGAATTCTTTGTCACAat                                    >  4:290715/1‑138 (MQ=255)
                                                                                                        gcCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCCCAAACTAGCGGCTCTAGCAAAACTCATGCCTCTATGATAGACCGTGGAAAGAGAAATCATTGTGACAATATGAGTGAAAAAACCa                    >  5:351632/1‑138 (MQ=255)
                                                                                                         cccGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGGCTCTTTGAAAGACCGGGGCTAGAGAATTCTTTGTAGCAAAATTAGTTTAAAAACCaa                   >  4:99356/1‑138 (MQ=255)
                                                                                                         cccGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATTGACCTTGGATAGAGAATTCTTTGTCACAATATGATTGAAAAAACGaa                   >  6:199749/1‑138 (MQ=255)
                                                                                                           cGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTGTTTTCTCGCAAACTAGCGGCGCTAGCAAAACTCATGACTCTATGATAGACCGTGGATAGAGAATTCTTTGTCACAATATGAGTGAAAAACCCAACtt                >  4:226614/1‑138 (MQ=255)
                                                                                                                         gCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCGGCACTAGCAAAACTCATGACTCAATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAACGAGTTTTTAGAAGtt   >  6:393980/1‑139 (MQ=255)
                                                                                                                          cAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAAGTCTTTGTGACAATATGAGTGAAAAAACCAACTAGTTTTTAGAAGttt  >  7:235773/1‑139 (MQ=255)
                                                                                                                                  ||                                                                                                                                 
CAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTAGCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAACCAACTAGTTTTTAGAAGTTT  >  CP006881/3725116‑3725369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: