BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,723,045	T→C	intergenic (‑159/‑142)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,045	0	T	C	100.0%	414.0 / NA	110	intergenic (‑159/‑142)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (39/71); total (39/71)

Only 100 of 110 total aligned reads displayed.

ACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑T‑GT‑T‑TTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGA  >  CP006881/3722910‑3723179

aCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCAt                                                                                                                                          >  3:124161/1‑138 (MQ=255)

    aaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAg                                                                                                                                     >  4:79510/1‑139 (MQ=255)

     aaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGc                                                                                                                                    >  8:35482/1‑139 (MQ=255)

      aaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCg                                                                                                                                   <  4:160791/139‑1 (MQ=255)

                       caCGCATAAAGGACACAGCGATCCTTTATCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑T‑At‑t‑tt                                                                                                              <  2:259726/138‑1 (MQ=255)

                         cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑T‑At‑t‑tttt                                                                                                            >  3:119639/1‑139 (MQ=255)

                         cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑T‑At‑t‑tttt                                                                                                            <  5:117948/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  5:6904/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  5:66730/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  8:48532/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  8:47694/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  1:246733/139‑1 (MQ=255)

                                 ggACACAGAGATCCTTTATCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGGCACAATCCCGCTTATTCAGATTTAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  8:326728/139‑1 (MQ=255)

                                  gACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑T‑At‑t‑tttt                                                                                                            <  3:232259/130‑1 (MQ=255)

                                  gACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑T‑At‑t‑tttt                                                                                                            >  4:232259/1‑130 (MQ=255)

                                    cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAg                                                                                                  >  8:391122/1‑139 (MQ=255)

                                     acaGCGATGCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGt                                                                                                 <  2:275017/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATTGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAAAAGt                                                                                                 >  7:98618/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGt                                                                                                 >  4:357777/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGt                                                                                                 <  2:222008/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGt                                                                                                 <  6:35596/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATACCGCTTATTCAGATTAAGAAAACGATTTCATCATAAATCAAGATAGCGTTAACGTCAAC‑T‑AT‑TATTTTAGATAAATAGt                                                                                                 >  6:10203/1‑139 (MQ=255)

                                      caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTAGCAGTCACAATCACGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATATCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGtt                                                                                                <  7:329409/139‑1 (MQ=255)

                                       aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGttt                                                                                               >  6:57346/1‑139 (MQ=255)

                                       aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGttt                                                                                               >  7:215182/1‑139 (MQ=255)

                                            tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATa                                                                                           >  1:293346/1‑138 (MQ=255)

                                                 tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcat                                                                                     >  4:351755/1‑137 (MQ=255)

                                                 tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcat                                                                                     >  3:334759/1‑137 (MQ=255)

                                                 tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTAACAATCCCGATTATTCAGATTAAGAATACGCTTTCATCAAAAATCATGATCGCGTTTTCGTCAAA‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcat                                                                                     >  7:253551/1‑137 (MQ=255)

                                                  ttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcatg                                                                                    >  1:279589/1‑136 (MQ=255)

                                                   tCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTGAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcatg                                                                                    <  6:296005/138‑4 (MQ=255)

                                                                         ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaatt                                                              >  4:198349/1‑136 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCTTCAAC‑T‑ATAT‑TTTAAGTTAAATAGTTTGATATAACATCTAGACAAAAATTCTTataaataaat                                                           >  2:122545/1‑134 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                            <  3:73173/138‑2 (MQ=255)

                                                                               gCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTTATtgtg                                                       <  5:87340/139‑1 (MQ=255)

                                                                                cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATTTAGACAAAAATTCGTAAAAATTAATtgtg                                                       >  6:323076/1‑138 (MQ=255)

                                                                                cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                       <  1:220737/138‑1 (MQ=255)

                                                                                   tACCAGTCACAATCCCGCTTATTCATATTAATAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTT‑TT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                    <  8:253551/138‑1 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  7:16647/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  3:272136/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  5:350801/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  5:323076/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  7:391122/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  5:283094/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  1:245178/138‑3 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATAc                                                 >  7:61552/1‑139 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATAAGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  8:101989/138‑3 (MQ=255)

                                                                                      cAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACt                                                <  7:32828/139‑1 (MQ=255)

                                                                                         tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                             <  5:285547/139‑1 (MQ=255)

                                                                                         tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                             <  4:372745/139‑1 (MQ=255)

                                                                                          cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     >  2:81147/1‑82 (MQ=255)

                                                                                          cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTaaa                                                                                                     <  1:81147/82‑1 (MQ=255)

                                                                                           acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTTGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcac                                            >  6:218686/1‑138 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  2:115681/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:377698/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  3:377875/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  4:128448/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  7:35482/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:276549/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  2:293346/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  3:79694/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  7:355587/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  8:379124/139‑1 (MQ=255)

                                                                                              aTCCCGCCTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGGTTTCGTCAAC‑TATT‑T‑TTTTAGTTAACTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  4:23500/139‑1 (MQ=255)

                                                                                              aTCCAGCTTAATCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAATAATTAATTGTGAAATACTTCACAata                                        <  4:45016/139‑1 (MQ=255)

                                                                                               tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTCGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                                       <  5:218686/139‑1 (MQ=255)

                                                                                                 ccGCTTATTCAGATTAAGAATACGCTTTCATCATATATCATGATAGCGTTTTCGTCAACTT‑TT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAATATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  4:194849/138‑1 (MQ=255)

                                                                                                 ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  4:36304/138‑1 (MQ=255)

                                                                                                 ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  3:79510/138‑1 (MQ=255)

                                                                                                 ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  1:327877/138‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  1:51277/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  1:191647/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  4:125384/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  3:215728/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAAACATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  1:52480/139‑1 (MQ=255)

                                                                                                    cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                  >  7:242452/1‑139 (MQ=255)

                                                                                                    cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                  >  1:129866/1‑139 (MQ=255)

                                                                                                       aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                  <  3:24137/136‑1 (MQ=255)

                                                                                                       aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                  >  4:24137/1‑136 (MQ=255)

                                                                                                         tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATAc                             >  1:40057/1‑139 (MQ=255)

                                                                                                           aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTa                           >  8:259914/1‑139 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACaa                                          >  2:323628/1‑122 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  2:376465/1‑124 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  6:2159/1‑124 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  7:288118/1‑124 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:376465/124‑1 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  8:288118/124‑1 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  5:2159/124‑1 (MQ=255)

                                                                                                                aagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt                       <  2:40057/137‑1 (MQ=255)

                                                                                                                aagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt                       <  4:124161/137‑1 (MQ=255)

                                                                                                                     tACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   >  6:100947/1‑121 (MQ=255)

                                                                                                                     tACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  5:100947/121‑1 (MQ=255)

                                                                                                                       cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  8:281947/114‑1 (MQ=255)

                                                                                                                       cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                >  1:315963/1‑138 (MQ=255)

                                                                                                                       cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                >  7:311060/1‑138 (MQ=255)

                                                                                                                       cGCTTTCATCATAAACCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                >  1:352140/1‑138 (MQ=255)

                                                                                                                             catcatAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  4:289007/108‑1 (MQ=255)

                                                                                                                             catcatAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  3:289007/1‑108 (MQ=255)

                                                                                                                               tcatAAATCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCAGAATATCGTGCTATACTATGCTCAATCATGaaagaaag       <  1:267417/139‑1 (MQ=255)

                                                                                                                                    aaTCATGATAGCGTTTTCGTCAAC‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGa  <  5:57346/139‑1 (MQ=255)

ACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑T‑GT‑T‑TTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGA  >  CP006881/3722910‑3723179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`