| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,986,011 | T→A | 6.9% | intergenic (‑159/‑46) | U712_20550 ← / → U712_20555 | putative HTH‑type transcriptional regulator yybR/putative manganese‑dependent inorganic pyrophosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,986,011 | 0 | T | A | 6.9% | 219.2 / 4.4 | 69 | intergenic (‑159/‑46) | U712_20550/U712_20555 | putative HTH‑type transcriptional regulator yybR/putative manganese‑dependent inorganic pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base T (28/36); new base A (3/2); total (31/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTTTTGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGAAAAACAAACTCG > CP006881/3985874‑3986147 | ttttttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGtt > 7:12739/1‑138 (MQ=255) tttGATACTACATTACATTTTTCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 5:44680/138‑1 (MQ=255) tttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 7:117862/138‑1 (MQ=255) tttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 4:207469/138‑1 (MQ=255) tttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 5:280340/138‑1 (MQ=255) tttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 3:117385/138‑1 (MQ=255) tttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 3:104614/138‑1 (MQ=255) tttGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 2:262408/138‑1 (MQ=255) tactacATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat < 7:203330/139‑1 (MQ=255) cattacaatTAGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATaaa < 1:221534/137‑1 (MQ=255) cattTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTaca > 8:62365/1‑139 (MQ=255) cattTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTaca < 1:222759/139‑1 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat < 6:266195/126‑1 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat > 5:266195/1‑126 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACacta > 6:147266/1‑139 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTAAAACTATATAAAGATTaca > 2:150213/1‑136 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTAAAACTATATAAAGATTaca > 2:154316/1‑136 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTAAAACTATATAAAGATTaca < 1:154316/136‑1 (MQ=255) tttGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTAAAACTATATAAAGATTaca < 1:150213/136‑1 (MQ=255) tGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACactact > 7:11010/1‑139 (MQ=255) cTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTaaaa < 5:256769/139‑1 (MQ=255) cTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTaaaa < 8:11010/139‑1 (MQ=255) tATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGc > 3:71908/1‑138 (MQ=255) tATTTTACACACCGTTTCTCCTGAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACAACTGCAGCAAGACGTGTTAAGCTATATAAAGATTACACTACTTAAAAAAGGATAGGAGc > 8:134436/1‑138 (MQ=255) tttACACACATTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGAAAGGAGCTAt > 4:31219/1‑138 (MQ=255) tACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat < 6:181802/101‑1 (MQ=255) tACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat > 5:181802/1‑101 (MQ=255) tACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATATAGATTACACTACTTAAAAAAGGATAGCAGCTATCAt > 8:92559/1‑139 (MQ=255) tACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCAt > 3:237027/1‑139 (MQ=255) acacacCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCAt < 2:249441/138‑1 (MQ=255) acCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat < 4:240027/96‑1 (MQ=255) acCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACtatat > 3:240027/1‑96 (MQ=255) acCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGaaa < 7:211556/139‑1 (MQ=255) acCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGaa > 5:228142/1‑138 (MQ=255) acCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTCCATGATTACACCTGCAGCAAGACGTGTAAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGaa > 1:113996/1‑138 (MQ=255) cTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa > 8:167269/1‑88 (MQ=255) cTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTaaa < 7:167269/88‑1 (MQ=255) ttCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGAt > 5:96971/1‑138 (MQ=255) cTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCg < 3:251573/139‑1 (MQ=255) aaaGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAGCTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGa < 7:134436/138‑1 (MQ=255) aaaTGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCaa < 1:7735/139‑1 (MQ=255) tGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAAc < 2:254089/139‑1 (MQ=255) cttcttATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAAcc < 6:96971/138‑1 (MQ=255) tcttATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAAcc > 1:46234/1‑136 (MQ=255) acaTCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCcagatacagat < 4:71908/139‑1 (MQ=255) tCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCcaga < 3:6023/129‑1 (MQ=255) tCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCcaga > 4:6023/1‑129 (MQ=255) tAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAAATATATAAAGATTACACTACATTAAATAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGtt < 3:31219/138‑1 (MQ=255) aaGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTc < 6:228142/138‑1 (MQ=255) ggTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCg < 7:230496/139‑1 (MQ=255) ggTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCg < 7:62365/139‑1 (MQ=255) ggTTTGCATGATTACACCTGCAGCAAGAAGTGTTAAACTATTTAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCg < 2:113996/139‑1 (MQ=255) tttGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGAt > 3:17695/1‑139 (MQ=255) ttACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCg > 6:127027/1‑128 (MQ=255) ttACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCg < 5:127027/128‑1 (MQ=255) ttACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGc > 3:98952/1‑139 (MQ=255) gcagcaAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTg > 7:190575/1‑138 (MQ=255) gcagcaAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTg > 5:178066/1‑138 (MQ=255) gcagcaAGACGTGTTAAACTATAAAAAGATTACACAACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTg > 2:6186/1‑138 (MQ=255) gcagcaAGACCTGTTAAACTAAATAAAGATTACACTAATTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTTATTTCGGACACCACTCCCCAGATACAGATACGATTAGTTCTGCGATTGCTTATGCTGAGTTg > 3:236349/1‑138 (MQ=255) cagcaAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGa > 4:123413/1‑138 (MQ=255) cagcaAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGa > 8:69962/1‑138 (MQ=255) aGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGaaaaa > 7:286381/1‑137 (MQ=255) aGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGaaaaa < 8:286381/137‑1 (MQ=255) gtgtTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGAAAAACAAACt < 8:12739/139‑1 (MQ=255) tgtTAAACTATATAAAGATTACACTACTTAAAAAAGGCTAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGAAAAACAAACTc < 6:203797/139‑1 (MQ=255) tgtTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGAt > 5:55566/1‑99 (MQ=255) tgtTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGAt < 6:55566/99‑1 (MQ=255) tgtTAAACTATATAAAGAATACACTACTTAAAAAACGATAGGAGCTATCATGGAACAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGAAAAACAAACTc < 6:89490/139‑1 (MQ=255) gtTAAACTATATAAAGATTACACTACTTAAAAAAGTATATGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGAAACTATTTGTTCTGCGATTGCTTATGCTGATTTGAAAAACAAACTCg > 8:145445/1‑139 (MQ=255) | TTTTTTGATACTACATTACATTTTGCAACTAATCTACCCAGTATTTTACACACCTTTTCTCCTTAGCTCAAAGAAAATGCTTCTTATTCACATCAATTTTTAAGGGTTTGCATGATTACACCTGCAGCAAGACGTGTTAAACTATATAAAGATTACACTACTTAAAAAAGGATAGGAGCTATCATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGATACAGATACGATTTGTTCTGCGATTGCTTATGCTGATTTGAAAAACAAACTCG > CP006881/3985874‑3986147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |