Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 695,557 | C→A | 6.5% | V101F (GTT→TTT) | U712_03390 ← | putative HTH‑type transcriptional regulator yerO |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 695,557 | 0 | C | A | 6.5% | 194.4 / 3.4 | 62 | V101F (GTT→TTT) | U712_03390 | putative HTH‑type transcriptional regulator yerO |
Reads supporting (aligned to +/- strand): ref base C (23/35); new base A (2/2); total (25/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.86e-01 |
ATACCGCTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACATACCGATATAA > CP006881/695423‑695687 | aTACCGCTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTACGGAATGATATTTTCGGTAAGCAAAAGAACGATa < 8:166065/139‑1 (MQ=255) aCCGCTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATaa > 5:112059/1‑138 (MQ=255) cTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCt > 2:281606/1‑139 (MQ=255) cTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCt > 8:101134/1‑139 (MQ=255) cTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCGCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGCATGATATTTTCGGTAAGCAAAAGAACGATAAAATCt > 4:199010/1‑139 (MQ=255) gATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTa > 4:255722/1‑139 (MQ=255) cGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATcgc > 3:225665/1‑138 (MQ=255) cGCCATAGGATACCAGCAAGGCGTTCCGGGACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATcg < 4:138633/137‑1 (MQ=255) ccATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTTTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGaa < 3:189478/139‑1 (MQ=255) ccATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCGTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGaa < 1:104941/139‑1 (MQ=255) aTAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGaaaa < 4:225665/139‑1 (MQ=255) aGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAgc > 6:9775/1‑139 (MQ=255) ggCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAgcg > 6:265666/1‑139 (MQ=255) ttCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCaa > 4:93513/1‑139 (MQ=255) ttCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCaa > 4:289367/1‑139 (MQ=255) gTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGc < 3:201164/139‑1 (MQ=255) cTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCttttt > 8:145531/1‑138 (MQ=255) cTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGAGCCAATTTGCttttt > 6:46324/1‑138 (MQ=255) cTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAAAGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCttttt > 8:169462/1‑138 (MQ=255) cTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTAGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTTTGATCTCGAAAATCCTCAAATAGAGCGCCATTTTGCttttt > 3:48469/1‑138 (MQ=255) cNTATCCGTCNCCATNGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAAAGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCttttt > 8:173634/1‑138 (MQ=255) tATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTaa > 6:162197/1‑139 (MQ=255) tCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAaca < 7:283575/139‑1 (MQ=255) tCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAaca < 1:281606/139‑1 (MQ=255) tCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAaca < 7:145531/139‑1 (MQ=255) tCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAaca < 1:56735/139‑1 (MQ=255) tctcCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAaca < 1:130712/135‑1 (MQ=255) tctcCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAaca > 2:130712/1‑135 (MQ=255) tctcCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTc > 2:69524/1‑139 (MQ=255) tcCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGaa < 4:225016/97‑1 (MQ=255) tcCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGaa > 3:225016/1‑97 (MQ=255) tcCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCt > 5:188284/1‑139 (MQ=255) tAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCgg > 1:206365/1‑139 (MQ=255) tAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCgg > 2:239686/1‑139 (MQ=255) tAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCgg > 6:177583/1‑139 (MQ=255) gTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGc > 8:30468/1‑135 (MQ=255) ttGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGAtct > 2:246152/1‑139 (MQ=255) ttGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGAtc < 7:175965/138‑1 (MQ=255) ttGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGAtc < 8:158663/138‑1 (MQ=255) ctGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGAtc < 3:166706/137‑1 (MQ=255) gCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGAtctt < 1:69524/138‑1 (MQ=255) tttcttgatttTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCTCCAATTTGCTTTATTAACACTTCATTAGGCGGCTTTCCGGCGATATCTACTTCtat < 6:274355/139‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 3:93513/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 5:177583/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 7:30468/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 6:26261/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 6:188284/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 1:239686/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAAAGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACNCTTCCTTAGGCGGCTTTNCGGNGAGATCTNCTTCTATATTTTTCAtt < 7:173634/138‑1 (MQ=255) tCCGGAATGATATTTTCGGTAAGCAAAAGAAAGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCAtt < 7:169462/138‑1 (MQ=255) cGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTg < 3:255722/139‑1 (MQ=255) gAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGtt < 3:289367/139‑1 (MQ=255) gAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGtt < 2:206365/139‑1 (MQ=255) gAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGtt < 3:264397/139‑1 (MQ=255) gAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGtt < 5:9775/139‑1 (MQ=255) atatTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATa < 1:283840/138‑1 (MQ=255) ttttCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACa < 7:101134/139‑1 (MQ=255) ttttCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACa < 6:112059/139‑1 (MQ=255) ttttCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACa < 4:152042/139‑1 (MQ=255) ttttCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACa < 3:197864/139‑1 (MQ=255) ggTAAGCAAAAGAACGCTAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACATACCg < 3:199010/139‑1 (MQ=255) cAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACATACCGATataa < 1:246152/139‑1 (MQ=255) | ATACCGCTCGATTCCTTCGCCATAGGATACCAGCAAGGCGTTCCGGTACAGCTTATCCGTCTCCATGGTTACTTTGTAAAAGTATTGCTTGATTTCTTGATTTTCCGGAATGATATTTTCGGTAAGCAAAAGAACGATAAAATCTTTATGATCGCGAAAATCCTCAAATTGAGCGCCAATTTGCTTTTTTAACACTTCCTTAGGCGGCTTTCCGGCGAGATCTTCTTCTATATTTTTCATTTTGTTCATAGACATACCGATATAA > CP006881/695423‑695687 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |