Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	pSIJ663_pHT315_araE_xy	2,655	Δ3 bp	intergenic (–/‑321)	– / → eryR	–/–

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	pSIJ663_pHT315_araE_xy	2655	2657	3	97 [0]	[0] 97	–/eryR	–/–

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	pSIJ663_pHT315_araE_xy	= 2654	0 (0.000)	97 (1.890)	53/250	0.1	100%	intergenic (–/‑324)	–/eryR	–/–
	?	pSIJ663_pHT315_araE_xy	2658 =	0 (0.000)					intergenic (–/‑320)	–/eryR	–/–

TATTGATGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  pSIJ663_pHT315_araE_xy/2521‑2654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTAATG  >  pSIJ663_pHT315_araE_xy/2658‑2794                                                                                                                                                                                                                                                                                 TATTGATGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  6:270904/139‑1 TATTGATGCTGGGGATACTAATTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  1:160864/139‑1   TTGATGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCA                                                                                                                                     >  8:354116/1‑138   TTGATGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  3:443470/137‑1      ATGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACT                                                                                                                                 <  4:476785/139‑1       TGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACT                                                                                                                                 >  1:403844/1‑138       TGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  1:33707/1‑133       TGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  2:33707/133‑1        GCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTT                                                                                                                                >  6:471970/1‑138          TGGGGATACTATTTACAGAGGCGCCATCTACTGATTTCGTAAAGGATTTGAAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAG                                                                                                                             <  8:244929/139‑1           GGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAA                                                                                                                              >  7:244929/1‑137           GGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCA                                                                                                                                     <  1:336906/130‑1           GGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCA                                                                                                                                     >  2:336906/1‑130            GGGATACTCTTAACCGCGGCGCCAGCCACTGATGTCGTAAAGGAGTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAG                                                                                                                             <  4:16139/137‑1            GGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAG                                                                                                                             <  6:143547/137‑1            GGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAG                                                                                                                             <  5:206769/137‑1             GGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAAAATGATGATCCCCGAAGCAATCTTAAGAGT                                                                                                                          >  4:442884/1‑139                     TTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGA                                                                                                                   <  4:233447/138‑1                        ACAGCGGCGCCCTCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGGTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAATAGTGTGTTGATAGT                                                                                                               >  1:140567/1‑139                         CAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGT                                                                                                               <  4:423605/138‑1                           GCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAAAACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTG                                                                                                              >  3:270823/1‑137                            CGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAG                                                                                                           <  5:471970/139‑1                             GGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAG                                                                                                                           >  4:172057/1‑122                             GGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAG                                                                                                                           <  3:172057/122‑1                               CGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTAT                                                                                                        >  4:213503/1‑139                               CGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTA                                                                                                                               >  6:9558/1‑116                               CGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTA                                                                                                                               <  5:9558/116‑1                               CGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  8:175170/1‑109                               CGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  7:175170/109‑1                                   ATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTA                                                                                                    <  3:442884/139‑1                                         TGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGA‑GTAGCGGTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTT                                                                                             >  5:57169/1‑139                                           ATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTT                                                                                             <  8:226177/138‑1                                           ATGTCCTAAAGTATTTTCAAGATAAAGTTATATAATTGCAGTAGCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTT                                                                                             <  2:140567/138‑1                                              TCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  4:238955/1‑94                                              TCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  4:489964/1‑94                                              TCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  3:238955/94‑1                                              TCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  3:489964/94‑1                                                GTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTA                                                                                        >  8:369611/1‑138                                                GTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTA                                                                                        >  7:11883/1‑138                                                GTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTA                                                                                        >  2:100728/1‑138                                                GTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTT                                                                                             >  7:339907/1‑133                                                GTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTT                                                                                             <  8:339907/133‑1                                                   AAGGATTTGCAAGATTAAGTTATTTCATTGCAGGATCATGAGGTAGCGTTTTTGAAGAGCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAAT                                                                                    <  5:69121/139‑1                                                        TTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAA                                                                               >  4:312642/1‑139                                                        TTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  1:232374/84‑1                                                        TTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  2:232374/1‑84                                                         TTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAAT                                                                              >  6:10065/1‑139                                                           GCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATT                                                                             <  7:354116/138‑1                                                           GCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATT                                                                             <  3:318271/138‑1                                                                ATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGT                                                                        >  3:279120/1‑138                                                                ATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  7:96662/1‑76                                                                ATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  8:96662/76‑1                                                                         TATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGAT                                                              >  5:372286/1‑139                                                                              TTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTA                                                          >  2:455554/1‑138                                                                              TTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTA                                                          >  2:421844/1‑138                                                                              TTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  3:493333/62‑1                                                                              TTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  4:493333/1‑62                                                                               TGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTTTATAATAGGAAGTAAAGTTAAATTAGATGCTAA                                                         >  7:485092/1‑138                                                                               TGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAG                                                                                                                           >  8:66411/1‑72                                                                               TGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAG                                                                                                                           <  7:66411/72‑1                                                                                GCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      <  2:97464/60‑1                                                                                GCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGC                                                                                                                                      >  1:97464/1‑60                                                                                   GGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATT                                                    >  4:17381/1‑139                                                                                         TGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGT                                                                                                                        <  8:465289/65‑1                                                                                         TGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGT                                                                                                                        >  7:465289/1‑65                                                                                              TAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAATTTTGTAATTAAG                                          >  3:384242/1‑138                                                                                               AGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAG                                          >  2:211610/1‑137                                                                                                GCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAG                                                                         <  4:105739/105‑1                                                                                                GCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAG                                                                         >  3:105739/1‑105                                                                                                GCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATT                                                                             >  6:161970/1‑101                                                                                                GCGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATT                                                                             <  5:161970/101‑1                                                                                                 CGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAG                                                                                                                           <  2:231464/54‑1                                                                                                 CGTTTTTGAACACCACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAG                                                                                                                           >  1:231464/1‑54                                                                                                              CACGATATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCAT                         >  3:4129/1‑139                                                                                                                    ATCTAATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGT                   >  5:277542/1‑139                                                                                                                        AATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGCAGGGATTCGTCATGTTGGTATTC               >  4:469198/1‑139                                                                                                                        AATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCA                                                                                                            <  8:292807/46‑1                                                                                                                        AATATGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCA                                                                                                            >  7:292807/1‑46                                                                                                                            TGTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAA            <  6:57169/138‑1                                                                                                                             GTTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAAT          >  7:329330/1‑139                                                                                                                              TTGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAAT          <  8:11883/138‑1                                                                                                                               TGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGC        >  5:228393/1‑139                                                                                                                               TGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGC        >  1:260126/1‑139                                                                                                                               TGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGC        >  5:47664/1‑139                                                                                                                               TGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGC        >  7:54045/1‑139                                                                                                                               TGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAA            <  5:380657/135‑1                                                                                                                               TGATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAA            >  6:380657/1‑135                                                                                                                                 ATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCG       >  7:438811/1‑138                                                                                                                                 ATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCG       >  1:334839/1‑138                                                                                                                                 ATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCG       >  6:192352/1‑138                                                                                                                                 ATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCG       >  4:160656/1‑138                                                                                                                                 ATCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCG       >  8:397595/1‑138                                                                                                                                  TCCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTA     <  3:402907/139‑1                                                                                                                                   CCCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTAA    >  5:342064/1‑139                                                                                                                                    CCCGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGTAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTAAT   <  6:277542/139‑1                                                                                                                                      CGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTAATG  >  3:307191/1‑138                                                                                                                                      CGAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGATAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTAATG  >  3:295725/1‑138                                                                                                                                                                                                                                                                                 TATTGATGCTGGGGATACTATTTACAGCGGCGCCATCTACTGATGTCGTAAAGGATTTGCAAGATAAAGTTATATCATTGCAGGATCATGAGGTAGCGTTTTTGAACACCACGATATCTAATATGTTGATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  pSIJ663_pHT315_araE_xy/2521‑2654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAGCAAACTTAAGAGTGTGTTGATAGTGCAGTATCTTAAAATTTTGTGTATAATAGGAATTGAAGTTAAATTAGATGCTAAAAATTTGTAATTAAGAAGGAGGGATTCGTCATGTTGGTATTCCAAATGCGTAATG  >  pSIJ663_pHT315_araE_xy/2658‑2794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.