| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 1,653,890 | T→C | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,653,890 | 0 | T | C | 99.0% | 372.7 / NA | 98 | L245P (CTA→CCA) | U712_08495 | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (62/35); minor base G (0/1); total (62/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTA > CP006881/1653757‑1654025 | cttGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCaaa < 1:425734/137‑1 (MQ=255) tgCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACaaa > 8:161176/1‑139 (MQ=255) gCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAAt > 2:26425/1‑139 (MQ=255) cTGCCCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAATGGTACTTATATCTAGGTACCAAACAACAAATTCCTAATTGAAtt > 3:91050/1‑139 (MQ=255) ccGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGaa < 7:329783/139‑1 (MQ=255) tgtCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGaaaa > 3:431738/1‑138 (MQ=255) tCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTaa < 1:11532/109‑1 (MQ=255) tCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTaa > 2:11532/1‑109 (MQ=255) tCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAAt > 4:70384/1‑139 (MQ=255) tCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAAt > 6:80367/1‑139 (MQ=255) tCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATAGAATTAGAAAATCTAAAATCTCATTaa > 1:169582/1‑138 (MQ=255) ttcttGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGGACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATcac < 3:210458/135‑1 (MQ=255) ttGTGAACGCACTCAGAAAGCTGGAGAGCGCCCGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACaaa > 7:327585/1‑138 (MQ=255) tgAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAg > 6:222838/1‑138 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTATTCACAAAAAGAAc > 1:423452/1‑139 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAGAGaa < 6:5291/138‑1 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAg > 8:295313/1‑136 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAg < 7:295313/136‑1 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGaa < 3:129980/138‑1 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGaa < 2:303577/138‑1 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAc > 7:163800/1‑139 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAc > 1:241809/1‑139 (MQ=255) aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAACCTCATTAATCACAAAAAGAAc > 1:388306/1‑139 (MQ=255) aCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAcc < 7:161176/139‑1 (MQ=255) cGCACTCAGAAAGCTGGAGCGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAccc > 4:88841/1‑139 (MQ=255) cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAccc > 8:339067/1‑139 (MQ=255) cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAccc > 1:421839/1‑139 (MQ=255) aCTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCAATAGGAAAGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCttt > 7:379325/1‑139 (MQ=255) cTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCtttt > 2:253073/1‑139 (MQ=255) cAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCttttt > 5:207319/1‑138 (MQ=255) cTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTc > 2:137325/1‑139 (MQ=255) ggAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCtt > 3:278156/1‑139 (MQ=255) cgcCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTa > 7:271786/1‑139 (MQ=255) cgcCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTa > 8:398423/1‑139 (MQ=255) aTCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGA‑GGTTCTTTTTTTATTTCaaa < 5:104541/135‑1 (MQ=255) aTCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGA‑GGTTCTTTTTTTATTTCaaa > 6:104541/1‑135 (MQ=255) aGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGa < 3:441118/139‑1 (MQ=255) aGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGa < 2:98109/139‑1 (MQ=255) gTCTAGATCATTAGGAATGAAATTTACTTATATCAAGGTACCAAACAACAAATTCCTAATTTAATTAGAAAATCTAAAATATAATTAATCACAAAAAGAACCCTTTTTGAGTGTTCTTTTTTTATTTCAAATAAAGGaa < 4:90371/139‑1 (MQ=255) tAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAAt > 4:294727/1‑138 (MQ=255) aTCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCaa > 1:459617/1‑138 (MQ=255) aTCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 8:108457/139‑1 (MQ=255) aTCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 1:26425/139‑1 (MQ=255) tCATTAGGAATGTAATGTAATTATATCAATGTAACAAACTACTAATTACTAATTGAATTAGAATATCTATAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 2:445285/138‑1 (MQ=255) tCATTAGGAATGAAATGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 8:260596/138‑1 (MQ=255) tCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATa < 4:454450/139‑1 (MQ=255) tCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAAATAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATa < 2:239202/139‑1 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTCCCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTATGAGGGTTCTTTTATTATATCAAATAAAGGAAATCAATAAg > 3:90371/1‑138 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGac > 8:271530/1‑89 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGaa < 7:271530/90‑1 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc > 7:268480/1‑139 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc > 8:107107/1‑139 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc > 4:495952/1‑139 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc > 5:493007/1‑139 (MQ=255) ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc > 8:397477/1‑139 (MQ=255) tAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAgat > 6:378492/1‑137 (MQ=255) tAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCt > 7:462877/1‑139 (MQ=255) tAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCt > 1:11015/1‑139 (MQ=255) ggAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCttt < 6:493007/139‑1 (MQ=255) aTGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTAtt > 3:428194/1‑139 (MQ=255) aaaGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt > 5:448721/1‑126 (MQ=255) aaaGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 6:448721/126‑1 (MQ=255) aaaGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTcc > 7:489986/1‑139 (MQ=255) aaaGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTcc < 4:339140/139‑1 (MQ=255) aaaCGTACTTATATAAAGGTACCAAACAACAAATTCCTAATTGAATTACAAAATCTAAAATCTCATTAATCAAAAAAAGAACCAGTTTTGAGGGTTCTTATATTTTTTCAAATAAAGGAAATCAATAAGCTATATTTcc > 6:238651/1‑139 (MQ=255) aatgTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTcc < 2:169582/135‑1 (MQ=255) aaGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCt < 1:253073/139‑1 (MQ=255) aGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATACGCTTTATTTCATg > 5:216061/1‑139 (MQ=255) aGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTg < 4:428194/139‑1 (MQ=255) aCTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCttttt > 3:362530/1‑96 (MQ=255) aCTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCttttt < 4:362530/96‑1 (MQ=255) aCTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 1:157608/120‑1 (MQ=255) aCTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt > 2:157608/1‑120 (MQ=255) aCTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTATTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAACCTTTATTTCCTGGGtt > 4:5391/1‑139 (MQ=255) atatCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGa > 7:483161/1‑137 (MQ=255) tCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTc > 5:273453/1‑139 (MQ=255) tCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTc > 1:337544/1‑139 (MQ=255) cAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGTGTTGAAAGTCt > 8:469277/1‑139 (MQ=255) aaGGTACGAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGTGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCt < 7:354812/138‑1 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt > 5:191615/1‑111 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 6:191615/111‑1 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt > 2:484012/1‑111 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAAt < 1:484012/111‑1 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGTTTGAAAGTCtt > 6:85833/1‑139 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt > 2:329987/1‑139 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt > 2:476394/1‑139 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt > 4:166237/1‑139 (MQ=255) aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt > 2:64426/1‑139 (MQ=255) aGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCttt < 7:469277/139‑1 (MQ=255) ggTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTc > 4:28335/1‑139 (MQ=255) ggTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTc > 6:171103/1‑139 (MQ=255) ggTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTc > 3:322350/1‑139 (MQ=255) ggTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCATTc > 7:125522/1‑139 (MQ=255) gTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAGCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCt < 8:379325/139‑1 (MQ=255) gTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTc > 4:227436/1‑138 (MQ=255) gTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCt < 3:70384/139‑1 (MQ=255) tACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTa < 4:431738/139‑1 (MQ=255) tACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTa < 1:137325/139‑1 (MQ=255) | CTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTA > CP006881/1653757‑1654025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |