| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 4 (0.000) | 20 (0.000) | 15/226 | NT | 83.5% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 4 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||
CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGT > pSIJ663_pHT315_araE_xy/5476‑5735 | cGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATA > 7:135635‑M1/1‑139 (MQ=255) caCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAgcg < 1:430492/138‑1 (MQ=255) aaCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTGCTCACCTGTTCTTTCCAGCGTTATCCCCTGATTCTGTGGATAAACCTATTACCCCCTTTTAGTGAGCTGTTATGACACaaaaaatcc > 2:430492/1‑136 (MQ=255) cgGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcg > 6:307357‑M1/1‑111 (MQ=255) cgGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcg < 6:199786‑M1/139‑29 (MQ=255) cgGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACAAGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcg > 6:274615‑M1/1‑111 (MQ=255) gTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagc < 6:29467‑M1/130‑33 (MQ=255) gTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagc > 5:29467‑M1/1‑98 (MQ=255) tgctggccttttgctCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaag > 1:271424‑M1/1‑85 (MQ=255) tgctggccttttgctCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaag < 2:271424‑M1/136‑52 (MQ=255) acaTGTTCTTTCCTGCGTTATCCCCTGATTCTGTTGATAACCGTATTACCGCCTTAGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatagg < 5:291683‑M1/139‑71 (MQ=255) caTGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgc > 3:274423‑M1/1‑68 (MQ=255) ttCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagctaggaagcggaagagcgcccaatacgcaaa < 5:274615‑M1/138‑75 (MQ=255) cTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACaaaa > 2:359984/1‑137 (MQ=255) tCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcct > 8:40703‑M1/1‑59 (MQ=255) ttATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGa < 1:359984/139‑1 (MQ=255) aTTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggcc > 8:304056‑M1/1‑42 (MQ=255) cTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccga < 5:307357‑M1/138‑100 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacga > 1:153557‑M1/1‑18 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagc > 4:38830‑M1/1‑18 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagc < 3:38830‑M1/50‑33 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaa > 7:272235‑M1/1‑18 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaa < 8:272235‑M1/36‑19 (MQ=255) tgagtgagCTGATAccgctcgccgcagccgaacgaccgagcgca > 7:380156‑M1/1‑14 (MQ=255) tgagtgagCTGATAccgctcgccgcagccgaacgaccgagcgca < 8:380156‑M1/44‑31 (MQ=255) | CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGT > pSIJ663_pHT315_araE_xy/5476‑5735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |