New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	2471183 =	75 (0.930)	5 (0.060)	4/222	NT	8.7%	intergenic (‑532/+42)	U712_12610/U712_12615	Sporulation‑specific extracellular nuclease/Putative DNA recombinase
	?	CP006881	= 2519215	33 (0.430)					coding (24/417 nt)	U712_12925	RNA polymerase sigma‑K factor

AAAATGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGAT  >  CP006881/2519080‑2519352                                                                                                                                         |                                                                                                                                           aaaaTGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAACCGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaat                                                                                                                                         >  6:164463‑M2/1‑136 (MQ=255)  aaaTTTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaat                                                                                                                                         >  6:171412‑M2/1‑135 (MQ=255)  aaaTGTAGCTTGGTTATTTAATGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaatg                                                                                                                                        >  6:387020‑M2/1‑135 (MQ=255)    aTGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                      <  7:50830/139‑1 (MQ=255)    aTGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                      <  4:331993/139‑1 (MQ=255)       tAGCTTGGTTATTTAAGGGATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATc                                                                                                                                   <  3:298984/139‑1 (MQ=255)             ggTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGATTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCa                                                                                                                               <  6:248409/137‑1 (MQ=255)                      aGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaagg                                                                                                                     >  8:310656‑M2/1‑115 (MQ=255)                         tATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATg                                                                                                                             >  6:12240/1‑127 (MQ=255)                         tATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATg                                                                                                                             <  5:12240/127‑1 (MQ=255)                            ccccTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCAtt                                                                                                              >  3:103566/1‑138 (MQ=255)                            ccccTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCACCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCAtt                                                                                                              >  7:9454/1‑138 (MQ=255)                                  cATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                      <  7:392154/109‑1 (MQ=255)                                  cATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                      >  8:392154/1‑109 (MQ=255)                                  cATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGaaaaa                                                                                                        >  4:404317/1‑138 (MQ=255)                                    ttCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacaccc                                                                                                      >  1:83057‑M2/1‑101 (MQ=255)                                    ttCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacaccc                                                                                                      >  3:47663‑M2/1‑101 (MQ=255)                                        cTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACaaa                                                                                                  >  6:161508/1‑138 (MQ=255)                                        cTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACaaa                                                                                                  >  7:228389/1‑138 (MQ=255)                                         tAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACaaaa                                                                                                 >  3:63033/1‑138 (MQ=255)                                            gAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACaaaaa                                                                                                >  3:114012/1‑136 (MQ=255)                                                  tttAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGtct                                                                                       >  7:250754/1‑139 (MQ=255)                                                     aaGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacacccctctttaatacgtttc                                                                                      >  1:264096‑M2/1‑84 (MQ=255)                                                       gCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATaatgagattgtaattacaaaaggggggtgcatacacccctctttaatacgtttcaa                                                                                    <  3:245227‑M2/138‑57 (MQ=255)                                                           ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCAc                                                                               >  4:109670/1‑138 (MQ=255)                                                            tattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCAcga                                                                             >  6:22206/1‑139 (MQ=255)                                                                      aaCTTACTAAACTTTTTTTTAGTCAAACTGTTACTTTAATTTTA‑AGCCCCCGTTTTTTTTAATTAAAATTTAAAATAAATTGCTTTTCG‑GCGATTTAAAAAAAAAAAAAAACCACGGCTCCCTTCACGATCCGATCggg                                                                   <  8:9454/139‑1 (MQ=255)                                                                       aCTGACTCAACATTTATATAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCCCGATCCGATCggg                                                                   >  4:490/1‑138 (MQ=255)                                                                       aCTGACTCAACAGTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCGGTTTGTAATGAATAATGATATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCGTTCACGATCCGATCGGGc                                                                  >  6:35940/1‑139 (MQ=255)                                                                           aCTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGa                                                              >  6:14948/1‑139 (MQ=255)                                                                           aCTAAACTTTTATTTCCTCAACGTGTTAC‑GTAAATTTACCGCCCCCCATTTTTTTAATAAAAAATCAATCCCTCGCGAGTGGGC‑CCGCATTCAAAAAAAAAAAACCCCACGTCTCCCTTCACGATCCGATCGGGCAgg                                                               <  2:44826/138‑1 (MQ=255)                                                                              cAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGAt                                                             >  2:10844/1‑137 (MQ=255)                                                                                       tttaGAAAAACTGTTACGTTAAATTTA‑TGCCCCCCCTTTTTTAAATTAATAATTAAATCCTCTTGCATTGGC‑GCGCATTCAAAAAAAAAAAAACACACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGa                                                   <  5:387388/138‑1 (MQ=255)                                                                                           gTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGa                                               >  2:86828/1‑138 (MQ=255)                                                                                            tCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGaaa                                             >  5:318568/1‑139 (MQ=255)                                                                                            tCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGaaa                                             >  5:32902/1‑139 (MQ=255)                                                                                            tCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGAGACGATCGGGCAGGATAAGGAAGGGAATGaaa                                             >  7:322181/1‑139 (MQ=255)                                                                                            tCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGAATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGTGAATGaaa                                             >  3:391400/1‑139 (MQ=255)                                                                                             aaaaCTTTTACGTTAAATTTA‑TCCCCCCCATTTTTTTAATTAATAATTAAATCCTAATGAATTGGC‑GCCAATAAAAAAAAAAAAAAAACCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAAt                                            <  3:109670/138‑1 (MQ=255)                                                                                                aCTGTAACGATAAATTTA‑CGCCCCCCATTTTTTATATTAAAAATCAAATCC‑CATCCATTTTCAGCTAATAAAAAAAAACAAAAACCCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAg                                         <  6:8529/139‑1 (MQ=255)                                                                                                              tttA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGttt                           >  7:150196/1‑139 (MQ=255)                                                                                                                         cccTTTTTTTAATTAATAATAAAATCCTCATGCATTTGC‑GCCAATTAAAAAAAAAAAAAAACCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGa                 <  5:345957/139‑1 (MQ=255)                                                                                                                         cccTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAATAAAAAAAAAAAATACGTCTCCCTTCACGATCCGATCTGGCAGGATAAGGAAGGGAATGAAATAAGAGTGATTGAGGTTTTGAAATCAg                  >  1:275205/1‑138 (MQ=255)                                                                                                                             ttttGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAAc             >  7:260158/1‑139 (MQ=255)                                                                                                                                    atgaataatgaaATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACg      >  7:177508/1‑139 (MQ=255)                                                                                                                                    atgaataatgaaATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACg      >  6:157166/1‑139 (MQ=255)                                                                                                                                    atcaataaagaaAACATCATCCTTCTGC‑GCTCATACAAAAAAAAAAAACCCCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGCCGTTTTGAAATCAGAAAACGAAGAc       <  6:318568/135‑1 (MQ=255)                                                                                                                                     tgaataatgaaATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGt     >  2:23965/1‑139 (MQ=255)                                                                                                                                       aataatcaaCTCCTCATGAATTGGC‑GCGCATTCAAAAAAACAAAAACCCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTg    <  5:93371/138‑1 (MQ=255)                                                                                                                                        ataattaaAACCTCATGAATTTGC‑GCGTATTAAAAAAAAAAAAAAACGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCCGATTGACGTTTTGAAATCAGAAAACGAAGACGTgat  <  5:161508/139‑1 (MQ=255)                                                                                                                                         |                                                                                                                                           AAAATGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTA‑TGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGC‑GCGCATTGAAAAAAACAAAAAAAGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGAT  >  CP006881/2519080‑2519352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.