Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 711,294 | T→C | 5.6% | K435R (AAA→AGA) | U712_03445 ← | Uncharacterized protein yezG |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 711,294 | 0 | T | C | 5.6% | 224.9 / 2.6 | 71 | K435R (AAA→AGA) | U712_03445 | Uncharacterized protein yezG |
Reads supporting (aligned to +/- strand): ref base T (36/31); new base C (2/2); total (38/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTCCTTCTTTAAGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATTTGCTTGCTGCTGTTTTGACTTTGGT > CP006881/711169‑711421 | gTCGTTCTTTAAGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGtttttt > 1:436342/1‑139 (MQ=255) cttcttTAAGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGa < 7:188379/139‑1 (MQ=255) cttTAAGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGttttttttga < 5:146131/137‑4 (MQ=255) cttTAAGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATAc > 3:59778/1‑139 (MQ=255) ctggCGTGACCCCGTTGACTGGGTTTTAAGGAACGCCGGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTc < 2:198827/136‑1 (MQ=255) aaGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTc < 3:3530/138‑1 (MQ=255) gTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGc < 5:140617/139‑1 (MQ=255) aCCCCGTTGCCTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTGAAGTTTGTTTTGTCGTGTTGTTTTGTTCCTTCACTggatg > 2:215375/1‑135 (MQ=255) aCCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCtg > 8:57237/1‑139 (MQ=255) aCCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCtg > 3:308714/1‑139 (MQ=255) aCCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCtg > 2:36878/1‑139 (MQ=255) cGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGtt < 6:229813/139‑1 (MQ=255) ttGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTgtgtctg > 1:198827/1‑136 (MQ=255) aCTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACtt < 7:363232/139‑1 (MQ=255) aCTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACtt < 7:57237/139‑1 (MQ=255) gTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTtttgt < 4:59778/139‑1 (MQ=255) tAAGGAACGCCTGCCGGCACTAAATCATGACGGTGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTtttgtttg < 2:403495/138‑1 (MQ=255) aGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGAt < 5:439847/138‑1 (MQ=255) aGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGAt < 7:16252/138‑1 (MQ=255) cGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGc > 6:310798/1‑111 (MQ=255) cGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGc < 5:310798/111‑1 (MQ=255) cGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGAt > 6:249551/1‑138 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACtt > 3:88439/1‑120 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACtt < 4:88439/120‑1 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAAc > 6:26384/1‑139 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAAc > 8:268159/1‑139 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAAc < 1:133596/139‑1 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAAc > 7:362676/1‑139 (MQ=255) cTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATAATTCAATGACTGTGTTTAGTTTTTGTTTGATGTGCTCAAc > 8:5989/1‑139 (MQ=255) ccGGCCCTAAATCATGACGGGGAGCATACGGCAGAATCTCCGCAAGTGTGAGAGCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGgt < 5:240924/139‑1 (MQ=255) ccGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCTAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGgt < 5:50231/139‑1 (MQ=255) tCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTgaga < 2:320301/139‑1 (MQ=255) tCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTgaga < 8:100228/139‑1 (MQ=255) tCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTgaga < 5:292903/139‑1 (MQ=255) tGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGAt < 7:31933/113‑1 (MQ=255) tGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGAt > 8:31933/1‑113 (MQ=255) tGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTg > 4:238165/1‑139 (MQ=255) gACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGt > 2:322073/1‑139 (MQ=255) gggATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATg < 5:4362/139‑1 (MQ=255) gatgatACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACttt < 1:28329/97‑1 (MQ=255) gatgatACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACttt > 2:28329/1‑97 (MQ=255) atACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCtttt > 3:162820/1‑139 (MQ=255) gagaATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCt > 7:392994/1‑139 (MQ=255) gagaATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCt > 6:78478/1‑139 (MQ=255) gagaATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTGTTTGGGCt > 6:246790/1‑139 (MQ=255) atatCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTg < 2:309823/139‑1 (MQ=255) tatCCGCATGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGCGCTCAACGGTTTGTTTTGAGACTGTTATGGCTTTTAGGGCTGTGGc > 6:245492/1‑139 (MQ=255) tatCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGc > 1:40352/1‑139 (MQ=255) tatCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGc > 6:291554/1‑139 (MQ=255) ccGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTAAATGCATGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGa > 5:147140/1‑139 (MQ=255) gCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGAt > 7:184485/1‑86 (MQ=255) gCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGAt < 8:184485/86‑1 (MQ=255) gCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGAtt > 7:29572/1‑139 (MQ=255) gtgtGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATttgct < 5:78478/139‑1 (MQ=255) tgAGATCTCCTATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATttgcttgc > 5:288408/1‑139 (MQ=255) tgAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAAGGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATttgcttgc > 2:155203/1‑139 (MQ=255) tgAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTa < 3:120113/108‑1 (MQ=255) tgAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTa > 4:120113/1‑108 (MQ=255) tgAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATttgcttgc > 1:20631/1‑139 (MQ=255) tcCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGgtt < 3:193697/85‑1 (MQ=255) tcCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGgtt > 4:193697/1‑85 (MQ=255) cGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTCGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATTTGCTTGCTGCTGtt < 8:362676/137‑1 (MQ=255) agatttgatttAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTCTTTACTATTAGTTTGATGTTATCAACGGTTTGTTTTGAGACTCTTATGGCTTTTTGGGCTGTTGCTGATTTGCTTGCTGCTGtttt > 5:268211/2‑139 (MQ=255) tgatttAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATTTGCTTGCTGCTGTTTTGACtt > 6:218722/1‑139 (MQ=255) tttAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGgt < 7:304879/74‑1 (MQ=255) tttAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGgt > 8:304879/1‑74 (MQ=255) tAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATTTGCTTGCTGCTGTTTTGACTTTGgt < 5:249551/138‑1 (MQ=255) gTTCTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTga < 7:257727/74‑1 (MQ=255) gTTCTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTga > 8:257727/1‑74 (MQ=255) gTTCTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTga > 8:264166/1‑74 (MQ=255) gTTCTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTga < 7:264166/74‑1 (MQ=255) | GTCCTTCTTTAAGCGTGACCCCGTTGACTGCGTTGTAAGGAACGCCTGCCGGCACTAAATCATGACGGGGATGATACGGGAGAATATCCGCAAGTGTGAGATCTCCGATTTGATTTAACTTGGTTTTGACGTGTTTTTTTGATACTTCAATGCCTGTGTTTACTTTTTGTTTGATGTGATCAACGGTTTGTTTTGAGACTGTTATGGCTTTTTGGGCTGTTGCTGATTTGCTTGCTGCTGTTTTGACTTTGGT > CP006881/711169‑711421 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |