| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 6.1% | intergenic (+571/–) | ampR → / – | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | pSIJ663_pHT315_araE_xy | 5,302 | 0 | A | C | 6.1% | 20447.7 / 216.4 | 7726 | intergenic (+571/–) | ampR/– | –/– |
| Reads supporting (aligned to +/- strand): ref base A (4189/2853); new base C (31/618); total (4226/3500) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 7974 total aligned reads displayed.
TTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAC > pSIJ663_pHT315_araE_xy/5165‑5440 | ccGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAgcgc > 7:105578/1‑139 (MQ=255) ttGGCCTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGc < 6:308885/139‑1 (MQ=255) ttGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTCCACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGc > 1:307968/1‑139 (MQ=255) gACTCAAGACGATAGTTACAGGATAAGGCGCTGCGGTCGGGCTGAGCGGGGGGTTCGAGCACACAGCCCAGCTTGGAGCGAACGCCCTACACCGAACTGAGATACCTACATCGT‑GAGCTATGAGAAAGCGCCACGCtac > 7:311117/1‑137 (MQ=255) aaGACGATAGTTCCCGGATAAGGCGCAGCGGGCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGa < 5:60784/138‑1 (MQ=255) aaGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGa < 5:401498/138‑1 (MQ=255) gATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAgg > 6:371310/1‑136 (MQ=255) gATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAAAGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTCCACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAgg > 5:184486/1‑136 (MQ=255) aTAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGgag > 3:77690/1‑138 (MQ=255) aTAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGA‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGgag > 8:198714/1‑138 (MQ=255) tAGTTACCGGATACGGCGCCGCGGTCGGGCTGAAGGGGGGGATCGAGCACACAGCCCAGCTGGGAGCGAACGACCTACACCGACCTGAGCAACCTACAGCGG‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGaa < 3:42093/139‑1 (MQ=255) aGTTACCGGATCCGGCGCAGCGGTCGGGCGGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGGGAACGACCTACAGCGATCTGAGCTACATCCAGCGT‑GAGCTAAGAGAAAGCGCCACGCGTCCCGAAGGGAGaac > 8:52481/1‑138 (MQ=255) ttACCGGATAAGGCGCAGCGGTCGGGCTGAACGGTGGGTTCGTGCACACAGCCCAGCTTGGCCGGAACGCCCACCACGGACGTGAGATCCATCCAGCTT‑GGGCTAGGAGAATCCGCCACCATACCCGAGGGGTGAAggg > 4:143201/1‑139 (MQ=255) aCCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACCCCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCg > 3:311305/1‑139 (MQ=255) aCCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCg > 8:156120/1‑139 (MQ=255) gggATAAGGGGCAGCGGGCGGGCTGAAGGGGGGGTTCGGGAACACAGCCCAGGTTGGAGCGAACGACCTACACCGAACTGTGATACCTACAGCGG‑GAGCTATGAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGa < 4:427879/138‑1 (MQ=255) aTAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGCCCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAg > 6:402637/1‑139 (MQ=255) aGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACCCCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTa > 7:289135/1‑139 (MQ=255) ggCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGAc < 1:392007/133‑1 (MQ=255) aGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCgg > 5:228950/1‑138 (MQ=255) aGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCgg > 4:172047/1‑138 (MQ=255) aGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCgg > 4:214268/1‑138 (MQ=255) gggCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGAACTACACAGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGc < 7:340038/139‑1 (MQ=255) gatggggggtTTCGTGCACACAGCCCAGGTTGGAGCGAACTACCTACACCGATCTGTGATACCTACAGGGT‑GATTTTTGATAAAGCGCCACGCTTCCCGAAGGGATAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 2:395618/135‑1 (MQ=255) gAACGGGGGGTTCGTGCACACACCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 7:430367/139‑1 (MQ=255) caccGGGGGGGGCGGCCACACACCCAAGCTTGGCCCGAACCCCCTACCCCTTACTTACACACCTACA‑CGTGGAGATATTAGAAAGCGCCACGCTTCCCTACGGGATAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 6:255371/136‑1 (MQ=255) aaCGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCTAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 8:226165/138‑1 (MQ=255) aaCGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 3:226707/138‑1 (MQ=255) aaCGGGGGGTTCGTGAACACAGCCCAGCTTGGAGCGAACGACCAACCCCGAACTCATATACCTACAGCGT‑GAGCAATGAGAAAGCGCCACGCTACCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 5:345449/138‑1 (MQ=255) aaCGGGGGGTTCGGGAACACAGCCCAGCTTGGAGCGAACGACATACCCCGAACTGAGATACCTACAGCGT‑GAGCTTTGAGAAAGCGCCACGATTCCCGACGGGAGAAAGGCGGCCAGGTATCCGGTAAGCGGCAgggg < 2:250903/138‑2 (MQ=255) aaCGGGGGGTGCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 7:79333/138‑1 (MQ=255) aaCGGGGGGGGCGTGCACACCGCCCAGCTGGGAGCGAACGACCTACACCCAACTGAGATACCAACAGCGG‑GAGCTATGAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 4:192972/138‑1 (MQ=255) ggggTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGATATACCTACCGCGT‑TAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAAc < 5:375923/139‑1 (MQ=255) ggggTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGat > 4:396852/1‑137 (MQ=255) gTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAg > 8:73407/1‑138 (MQ=255) ttCGTGCACAACGCCCTGCGTGCAGCGAACGACCTACACCGAACTGACATACCTCCCGCGT‑TAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGga < 2:127444/139‑1 (MQ=255) ttCGGGCACACAGCCCAGCTGGGAGCGAACGACCTACACCGACCTGAGATACCTCCCGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGga < 5:92367/139‑1 (MQ=255) cgggCACACCGCCACGCTTGGAGCGAACGACCTACACCGAACTGATATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGgaga < 7:401678/136‑1 (MQ=255) tGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGaa > 5:207324/1‑130 (MQ=255) aGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTGTGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGAATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAg > 1:243358/1‑139 (MQ=255) aGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGa > 6:130629/1‑79 (MQ=255) cccAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGc > 1:100455/1‑111 (MQ=255) cccAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAggg > 6:159500/1‑139 (MQ=255) ccAGCTGGGAGCTAACGACCTACACCGAACTGAGATACCTACCGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGa < 3:178275/139‑1 (MQ=255) aGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGga > 4:302410/1‑79 (MQ=255) gCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCt > 3:394482/1‑139 (MQ=255) ggAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTc > 1:160411/1‑137 (MQ=255) aGCGAACGCCCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 6:433271/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 1:35022/106‑1 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt > 7:368234/1‑106 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 8:280096/106‑1 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGTTTCCAgg > 4:369969/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 8:106243/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 5:13063/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 1:68495/1‑139 (MQ=255) aGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAgg > 3:1179/1‑139 (MQ=255) aaCGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCGCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAggggg > 7:232279/1‑138 (MQ=255) aaCGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATc > 7:262528/1‑86 (MQ=255) aaCGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAggggg > 2:209396/1‑138 (MQ=255) aaCGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGa < 3:342595/139‑1 (MQ=255) cGACCTACACCCAACGCTCATACCTCCAGCGT‑GAGCTATCAGAAAGCGCCCCGCTTCCCGAAGGGAGAATGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGaaa < 1:270599/139‑1 (MQ=255) caacacCGAACTGAGAAACCTACCGCGT‑GAGCTATGACAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGcc < 7:199375/137‑1 (MQ=255) aacacCAAACTGACAACCCTCCCGCGT‑GAGCTATCACAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTACGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCt < 6:33932/138‑1 (MQ=255) cacCGAACTGAGATCCCTACAGCGT‑CAGCTATGAGAAAGCGCCACGCTTCCCGACGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGGCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTgg < 2:53344/139‑1 (MQ=255) cccGACCTGACATACCTACCGCGG‑TCCCTATGCAAACGCGCCACGCTTCCCGACGGGAGAAAGGCGGACTGGTATCCGGTAAGCGGCAGGGGCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGt < 3:267469/138‑1 (MQ=255) acCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCATgg > 1:96674/1‑138 (MQ=255) ccGAACTTAGATACCTACAGCGT‑GAGCTTTGAGAACGCGCCACGCTTCCCGAAGGGAGAATGGCGGACAGGTATCGGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTa < 4:91092/139‑1 (MQ=255) ccaaCTCAGATACCAACAGCGT‑TCTCTATTAGAACGCGCCACGCTTCCCGAAGGGAGAAAGGCGTACAGGTATCCGGTAAGCGGCAGGGGCGGAACAGGAGAGCGCACGAGGGATCTTCCAGGGGGAAACGCCTGGTAt < 5:159668/137‑1 (MQ=255) cGACCTGAGAAACCTACAGCGT‑GAGCAATGACAACGCGCCACGCTACCCGACGGGAGAAAGGCGGACAGGTAGCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTAt < 8:392654/139‑1 (MQ=255) aaCTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGga > 4:263010/1‑98 (MQ=255) aaCTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCt > 8:332542/1‑139 (MQ=255) aCTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGa < 6:190763/48‑1 (MQ=255) aCTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGaa > 8:362786/1‑56 (MQ=255) aCTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAgg > 8:253441/1‑109 (MQ=255) aCTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCtt > 2:313724/1‑139 (MQ=255) gaTCCCTCCCGCGT‑GAGCTAGGAGAACGCGCCACGCTTCCCGACGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAg < 1:49412/139‑1 (MQ=255) gaTACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAg > 3:446314/1‑139 (MQ=255) ccTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt < 2:16039/78‑1 (MQ=255) aCAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTc > 2:349827/1‑139 (MQ=255) cGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGTGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGaaa < 7:59854/110‑1 (MQ=255) cGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGa < 2:272361/47‑1 (MQ=255) cGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGt > 8:304295/1‑139 (MQ=255) cGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGt > 5:426766/1‑139 (MQ=255) t‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGaa > 7:132407/1‑74 (MQ=255) t‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGaaa < 8:421886/108‑1 (MQ=255) t‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGttt > 1:199940/1‑139 (MQ=255) t‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGGATCTTTATAGTCCTGTCGGGttt > 4:333430/1‑139 (MQ=255) t‑GAGCTATGAGAAAGCCCCCCGCTACCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGATGGGTCTGAACAGGAGCGCGCACGAGGGAGCTTCCAGGGGGATACGCCTGGTATCTTTATAGTCCTGTCgggata > 4:114644/1‑136 (MQ=255) aGCTATTAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGcc < 6:212791/110‑1 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 3:200430/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 3:370534/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 1:13149/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCg > 5:273589/1‑139 (MQ=255) aGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCATTATAGTCCTGTCGGGTTTCg > 6:6895/1‑139 (MQ=255) gagaAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACct > 4:51516/1‑139 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAGGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGAATCTATATGGGCAGGACGGGTTTCGCCCCctaggac > 8:134126/1‑134 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGt > 3:148048/1‑56 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGTGTTTAGCCACCTCTGAc > 7:163700/1‑139 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAc > 2:82387/1‑139 (MQ=255) aGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAc > 5:316992/1‑139 (MQ=255) | TTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT‑GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGAC > pSIJ663_pHT315_araE_xy/5165‑5440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |