| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 979,099 | A→T | 5.5% | E140V (GAA→GTA) | U712_04785 → | Stage V sporulation protein R |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 979,099 | 0 | A | T | 5.5% | 275.7 / 4.4 | 95 | E140V (GAA→GTA) | U712_04785 | Stage V sporulation protein R |
| Reads supporting (aligned to +/- strand): ref base A (40/47); new base T (2/4); total (43/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.62e-01 | |||||||||||
ACTGATCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGATTGAAGAGGC > CP006881/978962‑979234 | aCTGATCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAACCACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGaa < 8:205780/139‑1 (MQ=255)aCTGATCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGaa < 7:244796/139‑1 (MQ=255) aTCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCTAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCACCAGCTGAACGGATAAAACACTATGAACAgg > 5:432777/1‑139 (MQ=255) aTCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGTTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAgg > 6:277251/1‑139 (MQ=255) aTCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAgg > 4:260619/1‑139 (MQ=255) aaaaTAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCa < 3:368082/139‑1 (MQ=255) aaaaTAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCa < 3:220049/139‑1 (MQ=255) aaataaatTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCAc < 1:10021/139‑1 (MQ=255) aatTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACACCTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAACGCATGGCGGCAACAGCTGCACGGATAAAACACTATGAACAGGTTCACGGGa > 7:43789/1‑138 (MQ=255) aatTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATACAACACTATGAACAGGTTCACGGGa > 4:251424/1‑138 (MQ=255) attgattgTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGAt > 4:374136/1‑138 (MQ=255) ttgattgTCGCACACGTTCTTGCTCATTTCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATaa < 3:393017/139‑1 (MQ=255) attgTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATaa > 5:137550/1‑136 (MQ=255) attgTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATaa > 4:393017/1‑136 (MQ=255) gTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAaagaag > 2:196806/1‑139 (MQ=255) gCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCtttttt < 3:57239/137‑1 (MQ=255) aTTTCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGaa < 6:206958/98‑1 (MQ=255) aTTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGaa > 5:206958/1‑98 (MQ=255) aTTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATg > 4:358757/1‑138 (MQ=255) aTTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAAAACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGCACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATg > 2:218815/1‑138 (MQ=255) aTTGCGATATCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATg > 1:231969/1‑138 (MQ=255) tGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCtttttt < 4:321232/131‑1 (MQ=255) tGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCtttttt > 3:321232/1‑131 (MQ=255) tGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCaa > 5:386647/1‑139 (MQ=255) cGATTTCATCAAAAACAACTGCCGTTTCCTAAACACGAAGCGAGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATTTACAGGTTCACGGGATAAAAGAAGTAGAATCTTTTTTAGATGCAAt < 6:137550/138‑1 (MQ=255) aTTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCt < 4:226233/139‑1 (MQ=255) tcttcAAAATCAACTGCCGATTCAAAAACACGTACCGAGATAAGCTGGAAAGCATGGCTGCAAGAGCTGAACGGATAAAACACTATCTACTTGTTCACGGGATAAATGAAGTCGAATCTTTTTTAGTTGCAATCCttt < 6:264146/138‑1 (MQ=255) tcttcAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCttt < 2:57012/138‑1 (MQ=255) tcttcAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCttt < 1:36123/138‑1 (MQ=255) tcttcAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCttt < 3:374136/138‑1 (MQ=255) tcttcAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCttt < 2:131087/138‑1 (MQ=255) aaaaaCAACTGCCTTTTCCAAAACACGTAGCGCTATATGGTTGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGTATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGAtt < 7:229503/138‑1 (MQ=255) aaaaaCAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGAtt < 1:24770/138‑1 (MQ=255) aaaCAACTGCCTGTTCACAACCACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATTAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAg < 4:227853/139‑1 (MQ=255) aaaCAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAg > 6:61777/1‑139 (MQ=255) acaacTGCCGTCTCCAAAACACGAAGCGCGATATGGTGGAACGCAGGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTAAGATGCAATCCTTTCGATTCAGGa < 2:281877/139‑1 (MQ=255) gATATGGTGGAAAGCATGGCGGCAACATCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa < 3:169692/139‑1 (MQ=255) gATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa < 1:196806/139‑1 (MQ=255) gATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa < 3:186397/139‑1 (MQ=255) atatGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAaag > 3:446238/1‑69 (MQ=255) atatGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAaag < 4:446238/69‑1 (MQ=255) tatGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACTGGATAAAAGAAGGCGACTCTTTTTTAGATGGAATCCTTTGGATTCAGGAGCATATCGATCCGTCGTTGGGCCGACCAAAg < 6:332893/139‑1 (MQ=255) tatGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAg < 5:61777/139‑1 (MQ=255) tatGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAg < 7:380139/139‑1 (MQ=255) gttgAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTCTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTc < 5:277251/135‑1 (MQ=255) tggAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCa < 1:201161/52‑1 (MQ=255) tggAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCa > 2:201161/1‑52 (MQ=255) tggAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTcc > 8:130697/1‑138 (MQ=255) tggAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTcc > 8:136965/1‑138 (MQ=255) accgCATGGCGGCAACAGCTGAACGGATAAAACACTATGACCAGGTTCACGGGATAAACGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGATCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATg < 4:164724/136‑1 (MQ=255) aaaGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATg > 7:270723/1‑139 (MQ=255) aaaGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATg < 7:130697/139‑1 (MQ=255) aaaGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATg < 7:136965/139‑1 (MQ=255) aGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATg > 7:291241/1‑137 (MQ=255) aGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATg > 4:432901/1‑137 (MQ=255) gCATGGCGGCAACAGCTGCACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAg < 4:240950/139‑1 (MQ=255) gCATGCCGGCAACAGATGAACGGATAACACACTCTGAACAGTGTCACTGGATAAAAGACGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAg < 2:415265/139‑1 (MQ=255) cATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAAt > 8:252343/1‑81 (MQ=255) cATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAAt < 7:252343/81‑1 (MQ=255) cATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCttt > 2:423641/1‑86 (MQ=255) cATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCttt < 1:423641/86‑1 (MQ=255) tGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGa > 5:69544/1‑94 (MQ=255) tGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGa < 6:69544/94‑1 (MQ=255) ggcggcAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTc > 1:52745/1‑89 (MQ=255) ggcggcAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTc < 2:52745/89‑1 (MQ=255) ggcggcAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGtgtg > 5:392217/1‑139 (MQ=255) cggcAACAGCTGTACGGATAAAACACAATGCCCAGGTTGACGGCAGAAAAGAAGCAGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGga < 4:426763/139‑1 (MQ=255) cAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATc < 2:45375/99‑1 (MQ=255) cAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATc > 1:45375/1‑99 (MQ=255) cAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGGCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGgatga < 3:221373/139‑1 (MQ=255) aGCTGAACTGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAg < 1:94468/139‑1 (MQ=255) aGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAg < 8:43789/139‑1 (MQ=255) aaCGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCATGAGCAGATCGATCCGACGTTGGTCCGACCACAGCTCCCATGGAGAGTGTATGATGAGGaa > 4:46290/1‑137 (MQ=255) aaCGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAaga < 8:270723/139‑1 (MQ=255) ccgtaaaaaaCACTATGAACCGGTTCACGGGAAAAAAGAAGTCGAATGTTTTTTAGCTGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAagag < 4:390928/133‑1 (MQ=255) cagtaTAAAACACTATTAAATGGTTCTCGGTATAAAATAAGTCGAATCTTTTTTATATGAAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAaga < 4:332707/134‑1 (MQ=255) cGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAagag > 5:148480/1‑138 (MQ=255) cGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAgagg > 3:379824/1‑139 (MQ=255) aTAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGgatga < 6:108441/125‑1 (MQ=255) aTAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGgatga > 5:108441/1‑125 (MQ=255) aTAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAag > 8:66562/1‑133 (MQ=255) aTAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAag < 7:66562/133‑1 (MQ=255) tAAAACACTATTAACCGGCTCACGGTATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGAt < 6:160819/139‑1 (MQ=255) cTATGACCAGGTTCACGGGATAAAAGCAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGGGGGTCCGACCAAAGCTCCAATGGTGTGTGGATGATGAGGAAGAGGAGATTGAagag < 7:302957/139‑1 (MQ=255) tATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGCGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGATTGAAGCgg > 8:227021/1‑139 (MQ=255) tATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCTTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGATTGAAGAgg > 5:5416/1‑139 (MQ=255) attaaCAGGATCACGGGAAAAAAGAAGTCGAATCATTTTAAGATGCAATCCTATCCATACAGTAGCATATCGCTCCGTCGTTCGTCCGACCAAAGCTACAATGGAGTGTGGATTAGGAGGAAGAGGAGATTGAAGACGc > 8:23230/4‑139 (MQ=255) aTGTACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGAtt > 4:54948/1‑131 (MQ=255) aTGTACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGAtt < 3:54948/131‑1 (MQ=255) aTGTACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGAtt < 3:60959/131‑1 (MQ=255) aTGTACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGAtt > 4:60959/1‑131 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa < 8:106107/93‑1 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa > 7:106107/1‑93 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa > 5:233209/1‑93 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCaa < 6:233209/93‑1 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAg < 7:305321/106‑1 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAg > 8:305321/1‑106 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTTTGGATGATGAGGAAGAGGAGATTGAAGAgg > 1:232206/1‑138 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGATTGTagctgt > 3:332707/1‑135 (MQ=255) aTGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGATTGAAGAgg > 6:316259/1‑138 (MQ=255) | ACTGATCCAAAATAAATTGATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCGTTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTGAACGGATAAAACACTATGAACAGGTTCACGGGATAAAAGAAGTCGAATCTTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGGTCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGAGATTGAAGAGGC > CP006881/978962‑979234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |