| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,654,882 | T→C | 9.5% | F60L (TTC→CTC) | U712_08505 → | Flagellar basal‑body rod protein flgC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,654,882 | 0 | T | C | 9.5% | 337.8 / 18.6 | 117 | F60L (TTC→CTC) | U712_08505 | Flagellar basal‑body rod protein flgC |
| Reads supporting (aligned to +/- strand): ref base T (68/37); new base C (6/5); total (75/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 121 total aligned reads displayed.
AACAGCTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCAAACGCTGAAGGAT > CP006881/1654746‑1655020 | aaCAGCTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGtt < 2:356995/138‑1 (MQ=255)aaCAGCTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGtt < 5:245906/138‑1 (MQ=255)aaCAGCTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGtt < 5:147445/138‑1 (MQ=255) aCAGCTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTtct < 2:212074/139‑1 (MQ=255) cTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGTTGAAGCGTTCTCTTc > 6:287093/1‑139 (MQ=255) cTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTc > 6:141047/1‑139 (MQ=255) cTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTc > 4:45265/1‑139 (MQ=255) tCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTc > 5:4292/1‑138 (MQ=255) gTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCattctc > 2:126405/1‑138 (MQ=255) cAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTtct > 2:330458/1‑125 (MQ=255) cAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTtct < 1:330458/125‑1 (MQ=255) aGAATGGCCGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCattctcaatt < 7:251520/139‑1 (MQ=255) gACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCaaa > 7:53462/1‑139 (MQ=255) aCGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAAt > 2:53745/1‑139 (MQ=255) aCGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTCTCCCTTCAGTCAAAAGGTGAATCGCTCTCTTCCATTCTCAATTCTCAAAt > 4:227743/1‑139 (MQ=255) gTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCg > 1:381843/1‑139 (MQ=255) gTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCg > 7:59564/1‑139 (MQ=255) tcTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCattct < 7:410298/116‑1 (MQ=255) tcTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCg > 5:418331/1‑139 (MQ=255) cTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCgg > 4:418897/1‑139 (MQ=255) cTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAAt > 8:7508/1‑139 (MQ=255) cTTAGCAAATATGGAAACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGGGCCTTACAGAAGAAAAATGGTTTCCCTTCAGGCAAAAGGTGAATCGCTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAAt < 7:260421/139‑1 (MQ=255) aGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCt > 6:351045/1‑139 (MQ=255) cAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCTATTCTCAAATGCGCGGAAGCGGGAATGCTg > 2:398057/1‑138 (MQ=255) cAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTg > 4:235243/1‑138 (MQ=255) cAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGCTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTg > 1:3323/1‑138 (MQ=255) aaTATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaa < 8:59564/139‑1 (MQ=255) atatGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaaa < 7:333643/139‑1 (MQ=255) atatGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaaa < 1:32777/139‑1 (MQ=255) tACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGgtgt > 3:130425/1‑138 (MQ=255) gtgCTAAGGAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTc < 3:256445/137‑1 (MQ=255) aaGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCATATGAGCGGAAGCGGGATTGCTGGAACCGGTGGGAAGGTTTCaaaaa > 2:200763/1‑139 (MQ=255) aaGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCaaaaa > 6:149831/1‑139 (MQ=255) aaGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCaaaaa > 1:127976/1‑139 (MQ=255) aaGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCaaaaa > 7:253695/1‑139 (MQ=255) aaGCAGGTGAATGGAGAGTGGGTGACTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTATCAAATGAGCGGAAGCGGGACTGCTGGAAACGGTGTGAAGGTTTCaaaaa > 6:280648/1‑139 (MQ=255) aGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAAt > 2:80664/1‑139 (MQ=255) aGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTAAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAAt > 5:24535/1‑139 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGATTCGTTCTCTTCCATTCTCACTTCTCAAATGAGCGGATGCGGGAATGCTGGAAACGGTGTGAAGGTTGCAAAGATTCCgg > 1:424147/1‑139 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCTGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACg > 3:439561/1‑138 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACg < 8:168987/138‑1 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACg > 5:76182/1‑138 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACg > 5:447795/1‑138 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACg > 7:168987/1‑138 (MQ=255) gTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACg < 1:53745/138‑1 (MQ=255) aaTGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGCTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACggagg < 2:3323/139‑1 (MQ=255) aTGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACggagga < 4:230224/139‑1 (MQ=255) agagTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAAt < 1:282562/81‑1 (MQ=255) agagTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAAt > 2:282562/1‑81 (MQ=255) agagTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGgatgat > 8:116037/1‑139 (MQ=255) agTGGGTGCCTTACAGAAGAAAACTGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTGCAGTCGGAATTCTCAAATGAGCGGAAGCGGGATTGCTGGGTCCGGTGTGACGGTTTGAAAAATTACGTAGGAGGATTc > 3:330450/1‑139 (MQ=255) agTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAg < 2:362826/82‑1 (MQ=255) agTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaaa > 7:132876/1‑103 (MQ=255) agTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaaa < 8:132876/103‑1 (MQ=255) agTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAACCGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTc > 8:157469/1‑139 (MQ=255) agTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTc < 1:126405/139‑1 (MQ=255) gTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCg > 2:103497/1‑139 (MQ=255) ggTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCTGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGCATGATTCGGAt > 8:110561/1‑139 (MQ=255) gTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGAtt > 8:257734/1‑139 (MQ=255) gTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGAtt > 6:230236/1‑139 (MQ=255) gTGCCATACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGGGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGAtt < 2:116006/139‑1 (MQ=255) aCAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGc > 2:348783/1‑77 (MQ=255) aCAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGc < 1:348783/77‑1 (MQ=255) aCAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAAGGGTGTGAAGGTTTCTATAATTACGGAGGATGATTGGGAGTTTAATCt > 2:351872/1‑139 (MQ=255) aCAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATc < 8:190940/138‑1 (MQ=255) aCAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATc < 6:4292/138‑1 (MQ=255) cAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCt < 7:7508/138‑1 (MQ=255) cAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCt < 8:53462/138‑1 (MQ=255) agaagaAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTg < 1:103809/139‑1 (MQ=255) agaagaAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTg > 1:144168/1‑139 (MQ=255) gaagaaAAATGGTTTCCCTTCAGTAAAAAGGTGAATCTATCTCTTCCATTCTCAAATCTCAAATCAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGTTTTCATATATAACGGAGGATGATTAGGATTTTAATCTTg > 7:33590/1‑138 (MQ=255) aagaaAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaaa < 8:204926/87‑1 (MQ=255) aagaaAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGaaa > 7:204926/1‑87 (MQ=255) aagaaAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTc > 4:212624/1‑139 (MQ=255) gaaAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAATAATTACGGAGGATGATTCGGATTTTAATCTTGTCTa > 6:221580/1‑139 (MQ=255) gaaAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTa < 7:116037/139‑1 (MQ=255) gaaAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTa > 4:163554/1‑139 (MQ=255) aaaaaTGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTAt > 4:181863/1‑139 (MQ=255) aaaTGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGa > 2:382240/1‑139 (MQ=255) aaaTGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGa > 4:178916/1‑139 (MQ=255) tttCCCTTCAGTCAACAGGTGAATCGTTCTCTTCCATTCTCAATTCTCTAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGAc < 7:100424/139‑1 (MQ=255) tttCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGAc < 7:115432/139‑1 (MQ=255) tCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACa < 3:45265/138‑1 (MQ=255) tCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACa < 5:351045/138‑1 (MQ=255) tCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACa < 5:141047/138‑1 (MQ=255) tCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAg > 8:57219/1‑139 (MQ=255) cTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGAcc < 3:181863/139‑1 (MQ=255) gTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTa < 7:236725/120‑1 (MQ=255) gTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTa > 8:236725/1‑120 (MQ=255) aaaaGGTGAATCGCTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCa < 7:97223/139‑1 (MQ=255) aaaaGGTGAATCGCTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCa < 3:227743/139‑1 (MQ=255) aaaTGTGAATCGTTCTCATCAATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCaa < 6:418331/139‑1 (MQ=255) aaaGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCaa < 1:80664/139‑1 (MQ=255) aaTCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCaa > 7:377747/1‑132 (MQ=255) aaTCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCaa < 8:377747/132‑1 (MQ=255) aaTCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCAAACGCTg > 4:358395/1‑138 (MQ=255) aaTCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCAAACGCTg < 1:103497/138‑1 (MQ=255) aaTCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCAAACGCTGa < 3:235243/139‑1 (MQ=255) aaTCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACACTGATGCAAACGCTg > 3:150056/1‑138 (MQ=255) ttCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCAAACGCTGAAGGat < 7:57219/139‑1 (MQ=255) | AACAGCTCAGCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGACAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATGGTTTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCAAATGAGCGGAAGCGGGAATGCTGGAAACGGTGTGAAGGTTTCAAAAATTACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAGACCCTGATGCAAACGCTGAAGGAT > CP006881/1654746‑1655020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |