| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,657,548 | C→T | 13.3% | P131L (CCG→CTG) | U712_08520 → | Flagellar motor switch protein FliG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,657,548 | 0 | C | T | 13.3% | 235.0 / 23.9 | 90 | P131L (CCG→CTG) | U712_08520 | Flagellar motor switch protein FliG |
| Reads supporting (aligned to +/- strand): ref base C (35/43); new base T (6/6); total (41/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.87e-01 | |||||||||||
GGAAAAGGCGCTTGGAGAGGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATCGCGGTCATGGATAGAACGTCTCCAGAAATAAT > CP006881/1657414‑1657683 | ggAAAAGGCGCTTGGAGAGGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCg > 5:275819/1‑136 (MQ=255) gAAAAGGCGCGTGGAGAGGATAAGGCGGAGAACATTCTCAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCa < 7:222372/137‑1 (MQ=255) taGGCGCTTGGAGAGGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTATTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGa < 8:420214/138‑1 (MQ=255) aaGGCGCTTGGAGAGGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGa < 3:438686/139‑1 (MQ=255) aaGGCGCTGGGATAGTATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGa < 6:275819/139‑1 (MQ=255) cTTGGAGAGGATAAGGCGGAGATCATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGACAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGt < 6:345131/139‑1 (MQ=255) cgcggATAAGGAGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTACACCATTTGATTTGGCCAG‑AACAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGCCGATGGCGTTAATc < 6:130735/136‑1 (MQ=255) agagGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 1:104419/139‑1 (MQ=255) agagGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 6:208804/139‑1 (MQ=255) agagGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 6:307404/139‑1 (MQ=255) agagGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 7:316916/139‑1 (MQ=255) agagGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 5:18314/139‑1 (MQ=255) agagGAGAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 5:188715/139‑1 (MQ=255) gATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCGAG‑CTAAGCGGAGCCAGCACAAATTTTGAATGTTATCCAGGAAGAGCATCCGCAGACGATGGCGTGAATCTGGt > 6:430485/1‑139 (MQ=255) gATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGt > 1:50357/1‑139 (MQ=255) aTAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTc < 8:402301/139‑1 (MQ=255) tAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCt < 1:124806/139‑1 (MQ=255) tAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCt < 6:34569/139‑1 (MQ=255) acgCGGAGAACCTTCTAAACAGGCTGACATCTTCTTTGGATGTTAAACCAATTGCTTTTGCCAGTAAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTc < 2:315165/135‑1 (MQ=255) ggCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTA‑CCAGCAAGAGCATCTGCAGACGATGGCGTTAATc < 4:441832/129‑1 (MQ=255) ggCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTA‑CCAGCAAGAGCATCTGCAGACGATGGCGTTAATc > 3:441832/1‑129 (MQ=255) gCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt < 7:426795/139‑1 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGTCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 5:283475/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTAtt > 3:187849/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGa < 6:332613/114‑1 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGa > 5:332613/1‑114 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCt > 8:327169/1‑131 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCt < 7:327169/131‑1 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 3:237316/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 8:426795/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 5:75440/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 7:316453/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 2:93082/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 5:115951/1‑135 (MQ=255) agaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCAATTGATTTTGCAAG‑AAAAGCGGAGCCAGAACAAATTTTGAAATTTATCAAGCAAGAGAATCTGCAGACGATGGCGTAAATCTAGTCTTAtt > 7:367350/1‑135 (MQ=255) agaACATTCTAAACAGGCGGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCGGAACAAATGTTGAATTTTATCCATCCAGAGCATCCGCCGCCGCTGGCGTTACTGTTGTCTTATTAAgc > 7:62945/1‑138 (MQ=255) gaACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGAt < 6:115951/139‑1 (MQ=255) ttCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc > 8:157869/1‑119 (MQ=255) ttCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATc < 7:157869/119‑1 (MQ=255) tCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCt > 7:367604/1‑124 (MQ=255) tCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCt < 8:367604/124‑1 (MQ=255) tCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAttt > 5:311674/1‑129 (MQ=255) tCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAttt < 6:311674/129‑1 (MQ=255) tCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTg > 1:358529/1‑139 (MQ=255) aCAGGCTGTCTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAACGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGc < 5:341414/139‑1 (MQ=255) aCAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGc < 5:436004/139‑1 (MQ=255) ggCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCgg > 1:159179/1‑139 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCggg < 4:187849/139‑1 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGt < 7:86296/104‑1 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGt > 8:86296/1‑104 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt > 2:288789/1‑119 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTAtt < 1:288789/119‑1 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCggg > 7:360930/1‑139 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCggg > 6:233526/1‑139 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCggg < 2:358529/139‑1 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCggg > 7:124808/1‑139 (MQ=255) gCTGACTTCTTCTTTGCAGGTTAAAACTTTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCggg < 8:367350/139‑1 (MQ=255) cTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGc < 3:74357/139‑1 (MQ=255) gACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGt > 2:37310/1‑101 (MQ=255) gACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGt < 1:37310/101‑1 (MQ=255) tGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTc < 2:171717/100‑1 (MQ=255) tGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTc > 1:171717/1‑100 (MQ=255) aGGTTAAACCTTTTGTTTTTGCCAG‑AAAAGCGGAGCCATAACAAATTTTGATTTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCt < 4:99784/139‑1 (MQ=255) aGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCt < 8:316453/139‑1 (MQ=255) aGGCTAACCCATTGGATTTTGCCAG‑AAAAGCGGCGCCAGAACAAATTTAGAATATTATCCAGCAAGCGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCt < 6:209660/139‑1 (MQ=255) gTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTg > 3:210236/1‑138 (MQ=255) ttAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGaa < 7:258926/139‑1 (MQ=255) tAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATc < 7:353454/104‑1 (MQ=255) tAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATc < 1:222828/104‑1 (MQ=255) tAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATc > 8:353454/1‑104 (MQ=255) tAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATc > 2:222828/1‑104 (MQ=255) ttGATTTTGCCAG‑AACAGCGGAGCCAGAACAAATTTTGATTTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGTCAAATTTTATCCTAGCTGAACCCTGAAGt > 3:309133/1‑139 (MQ=255) ttGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCt > 1:62904/1‑134 (MQ=255) ttGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCTGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCt < 2:62904/134‑1 (MQ=255) ttGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTc > 8:8005/1‑85 (MQ=255) ttGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTc < 7:8005/85‑1 (MQ=255) ttGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGt > 1:391106/1‑139 (MQ=255) aTTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCa < 8:124808/139‑1 (MQ=255) cGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGc > 6:313292/1‑136 (MQ=255) gAACAAATTTTGAATTTTATCCAGCCAGAGCAGCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATcg < 2:42382/139‑1 (MQ=255) gAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATcg < 2:198949/139‑1 (MQ=255) gAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATcg < 3:351121/139‑1 (MQ=255) aaCAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATcgc > 5:156071/1‑139 (MQ=255) aTTTTGATTTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATCGCGGTCa < 1:271210/139‑1 (MQ=255) aTTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATCGCGGTCa < 2:306840/139‑1 (MQ=255) gagaATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGACCCCTGAAGTGAAGGCTGAGGTTGCGAGAAGAATCGCGGTCATGGATAGAACGTCTCCAGaa > 5:185717/1‑138 (MQ=255) gagCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATCGCGGTCATGGATAGAACGTCGCCAGaa > 3:276845/1‑138 (MQ=255) tCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGaa < 1:331140/72‑1 (MQ=255) tCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGaa > 2:331140/1‑72 (MQ=255) tCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATCGCGGTCATGGATAGAACGTCTCCAGAaataat > 7:314275/1‑138 (MQ=255) | GGAAAAGGCGCTTGGAGAGGATAAGGCGGAGAACATTCTAAACAGGCTGACTTCTTCTTTGCAGGTTAAACCATTTGATTTTGCCAG‑AAAAGCGGAGCCAGAACAAATTTTGAATTTTATCCAGCAAGAGCATCCGCAGACGATGGCGTTAATCTTGTCTTATTTAGATCCAGTGCAGGCCGGGCAAATTTTATCCGAGCTGAACCCTGAAGTGCAGGCTGAGGTTGCGAGAAGAATCGCGGTCATGGATAGAACGTCTCCAGAAATAAT > CP006881/1657414‑1657683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |