| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,187,102 | Δ1 bp | intergenic (‑2/+10) | U712_10955 ← / ← U712_10960 | 3‑phosphoshikimate 1‑carboxyvinyltransferase/Prephenate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,187,102 | 0 | A | . | 100.0% | 422.1 / NA | 92 | intergenic (‑2/+10) | U712_10955/U712_10960 | 3‑phosphoshikimate 1‑carboxyvinyltransferase/Prephenate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (53/39); total (53/39) | |||||||||||
CTCCCGGCAGAAAGTTTTTCACAGTTGTTGTGCCCTTCGCTAGCGCGCCAAACATGACGGAACGGTGAGAAATGGATTTATCACCAGGAATATGTATTTCTCCGTTTAAGGCCTGCACCTTTTCTCTTTTCATTATTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCGTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATCTTCTCGTGTTTCAAT > CP006881/2186968‑2187234 | cTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCAtttttt < 7:337236/138‑1 (MQ=255)cTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCAtttttt < 3:256550/138‑1 (MQ=255)cTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCAtttttt < 3:142062/138‑1 (MQ=255) cccGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCa > 8:438143/1‑139 (MQ=255) cccGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCa > 5:422884/1‑139 (MQ=255) cccGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCa > 3:268375/1‑139 (MQ=255) cGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCAc > 6:300033/1‑138 (MQ=255) aactgttgttGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaa < 3:20245/134‑1 (MQ=255) actgttgttGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaaaa < 6:422884/136‑1 (MQ=255) actgttgttGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaaaa < 3:379438/136‑1 (MQ=255) ttgttgTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGtt > 1:278997/1‑138 (MQ=255) cctgccGCTAGCGCGCCAAAAATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTcc > 1:194921/6‑139 (MQ=255) tgccGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGc > 8:360579/4‑139 (MQ=255) cGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg < 5:379394/139‑1 (MQ=255) cGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg > 8:262490/1‑139 (MQ=255) cGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg < 2:121878/139‑1 (MQ=255) cGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg < 2:336678/139‑1 (MQ=255) cGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg < 8:108449/139‑1 (MQ=255) gcgcgcCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCtt < 6:178919/139‑1 (MQ=255) gcgcgcCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCtt < 6:237749/139‑1 (MQ=255) ccAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATGTTCCGCCCGGGCTTCAATg > 3:156867/1‑139 (MQ=255) ccAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATg > 1:228005/1‑139 (MQ=255) ccAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATg > 4:11264/1‑139 (MQ=255) aaaCATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa < 7:108382/139‑1 (MQ=255) aaaCATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa < 4:268375/139‑1 (MQ=255) aaaCATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa < 3:149133/139‑1 (MQ=255) aaaCATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa < 7:411205/139‑1 (MQ=255) cagagcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTg < 3:146550/134‑1 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc > 7:374259/3‑114 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc < 8:374259/112‑1 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCtt < 5:252991/119‑1 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCtt > 6:252991/3‑121 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa > 8:371495/3‑128 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa < 7:371495/126‑1 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGccc > 1:74594/3‑139 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGccc > 5:33851/3‑139 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGccc > 8:177574/3‑139 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGccc > 6:188040/3‑139 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGTAGTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGccc > 6:305856/3‑139 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGCATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaaaa > 1:370049/3‑99 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGCATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaaaa < 2:363942/97‑1 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGCATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaaaa > 1:363942/3‑99 (MQ=255) agcGGTGAGAAATGGATTTATCACCGGGAATATGCATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATaaaaa < 2:370049/97‑1 (MQ=255) cGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGccctt > 7:397688/1‑137 (MQ=255) tGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTg < 2:194921/139‑1 (MQ=255) tGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTg < 4:387003/139‑1 (MQ=255) tGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATATCGTTTCATT‑TTTTACACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTg > 4:165070/1‑139 (MQ=255) aaTGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGgt < 7:438143/138‑1 (MQ=255) tttATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGtcatc < 1:285922/139‑1 (MQ=255) ttATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGtcat > 1:300586/1‑137 (MQ=255) atatGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTg < 8:397688/139‑1 (MQ=255) tatGTATTTCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGa > 8:424069/1‑139 (MQ=255) ttCTCCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTa > 4:84047/1‑138 (MQ=255) tctcCATGTAAGGTCTGCCCCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAACTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATAAGACTGAAAAATGATcagtaa > 1:237180/1‑133 (MQ=255) tctcCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCa > 1:178139/1‑85 (MQ=255) tctcCATGTAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCa < 2:178139/85‑1 (MQ=255) catgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATGAGACTGAAAACTGATCCTTTAAATcc > 7:209383/5‑139 (MQ=255) catgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATcc < 5:188040/135‑1 (MQ=255) catgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATcc < 3:84047/135‑1 (MQ=255) catgtAAGGTCTGCACCTTATCTCGTTGCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATcc > 7:119648/5‑139 (MQ=255) catgtAAGGTCTGCACCTTATCTCGTCTCATT‑TTTTCGACCTGAATCAGCATTAAAAGTTTCATATTCCGCCCGGGGTTCTATGCATTGTTCTGGCCTTTTGCGGTCGTGATCAGTCTGAATACTGATCCTTAAAATcc < 5:91/135‑1 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc > 7:433277/3‑70 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc < 8:433277/68‑1 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc > 3:229886/3‑70 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc < 4:229886/68‑1 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATcc < 4:184142/135‑1 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATcc > 3:184142/3‑137 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTGTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCg > 1:357600/3‑139 (MQ=255) tgtAAGGTCTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTACATATTCCGCCCGGGCTTCAATGCATAGTTCTGACCTTTTGCGGTCGTCAACAGACTGAAAAATGAACCTTAAAATCACg > 4:426494/3‑139 (MQ=255) cTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc > 8:199649/1‑62 (MQ=255) cTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc < 7:199649/62‑1 (MQ=255) cTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGCCTGAAAACTGATCCTTAAAATCCCGTTAatatg > 6:374190/1‑138 (MQ=255) cTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAatata > 2:18037/1‑138 (MQ=255) cTGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGCCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGAAAGAAAACTGATCCTAAAAAAAACGTTAatat > 4:283283/1‑138 (MQ=255) tGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATAtcc > 1:86604/1‑138 (MQ=255) tGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACAGAAAACTGATCCTTAAAATCCCGTTAATAtcc > 5:298871/1‑138 (MQ=255) tGCACCTTATCTCGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTACGCCCGGGCTTAAATGCATTGTTCTGCACTTTTGCGGTCGTCATCAGAATGAAAACTGATACTTAAAATCACTTTAatatac > 4:402472/1‑137 (MQ=255) tatctcGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc < 6:96875/52‑1 (MQ=255) tatctcGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGcc > 5:96875/3‑54 (MQ=255) tatctcGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATACTCTCgtg > 7:356384/3‑139 (MQ=255) atctcGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATCCTCTCgtgt > 1:197781/2‑139 (MQ=255) atctcGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATCCTCGCgtgt > 5:379266/2‑139 (MQ=255) atctcGTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTAGTCATCAGCCTGAAAACTGAAGCTTAAAATACCGTTAATATCCTCTCgtga > 3:359708/2‑138 (MQ=255) ctcgTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGgt < 6:172948/85‑1 (MQ=255) ctcgTTTCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGgt > 5:172948/1‑85 (MQ=255) gtttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATACTCTCGTGTTTcga > 7:342683/2‑137 (MQ=255) gtttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCGTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATCCTCTCGTGTTTcga < 1:217061/138‑3 (MQ=255) tttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATCCTCTCGTGTTTCgat < 7:177574/139‑1 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg > 2:47740/1‑48 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCg < 1:47740/48‑1 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa < 1:400284/60‑1 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCa > 2:400284/1‑60 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTc > 7:329098/1‑66 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTc < 8:329098/66‑1 (MQ=255) ttCATT‑TTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCTTTTGCGGTCGTCATGAGGCTGAAAACTGATACTTAAAATCCCGTTAATATCAAATCGTGtttggat > 2:217061/1‑134 (MQ=255) | CTCCCGGCAGAAAGTTTTTCACAGTTGTTGTGCCCTTCGCTAGCGCGCCAAACATGACGGAACGGTGAGAAATGGATTTATCACCAGGAATATGTATTTCTCCGTTTAAGGCCTGCACCTTTTCTCTTTTCATTATTTTCCACCTCAATCAGCATAAAAAGTTTCATATTCCGCCCGGGCTTCAATGCATTGTTCTGCCCGTTTGCGGTCGTCATCAGACTGAAAACTGATCCTTAAAATCCCGTTAATATCTTCTCGTGTTTCAAT > CP006881/2186968‑2187234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |