Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	1,901,183	(T)6→7	coding (274/504 nt)	U712_09535 ←	Uncharacterized protein ynfC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	1,901,177	1	.	T	100.0%	254.1 / NA	81	A94T (GCT→ACT)	U712_09535	Uncharacterized protein ynfC
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (33/48);  total (33/48)

TAAGCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑TTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGCCCCTGTGATGGATTTCTTCTCATCATCAG  >  CP006881/1901043‑1901302                                                                                                                                        |                                                                                                                              tAAGCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCGAGTATAAAGC‑tttt                                                                                                                           >  6:379089/1‑139 (MQ=255) tAAGCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑tttt                                                                                                                           >  1:242870/1‑139 (MQ=255)  aaGCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAAAAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATTAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑ttttt                                                                                                                          <  4:45076/139‑1 (MQ=255)  aaGCCTAAAAGCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑ttttt                                                                                                                          <  4:50922/139‑1 (MQ=255)   aGCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑ttttt                                                                                                                          <  5:191632/138‑1 (MQ=255)    gCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑ttttttt                                                                                                                        <  8:288864/139‑2 (MQ=255)     ccTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑tttttttc                                                                                                                       >  5:431873/1‑137 (MQ=255)         aaaTCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCt                                                                                                                    <  3:415550/139‑1 (MQ=255)            tCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGAc                                                                                                                 <  3:394271/139‑1 (MQ=255)            tCACCATTCTTAACATAAACAACATCTTTAACAGCCTCCTCATAATTTCGTTACATAATCGGGTGATGATGAACATGAAGTTTGCCGAAATAAGACGCTTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGAc                                                                                                                 <  1:427045/139‑1 (MQ=255)               ccATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTc                                                                                                              >  8:351426/1‑139 (MQ=255)               ccATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTc                                                                                                              >  5:177779/1‑139 (MQ=255)               ccATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTc                                                                                                              >  7:70880/1‑139 (MQ=255)                 aTTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTg                                                                                                            <  6:431873/139‑1 (MQ=255)                 aTTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTg                                                                                                            <  2:673/139‑1 (MQ=255)                 aTTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTg                                                                                                            <  6:177220/139‑1 (MQ=255)                 aTTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTg                                                                                                            <  8:64781/139‑1 (MQ=255)                       aaGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGa                                                                                                       <  7:351426/138‑1 (MQ=255)                       aaGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAg                                                                                                      >  1:435607/1‑139 (MQ=255)                          aTAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTAt                                                                                                   >  7:118955/1‑139 (MQ=255)                            aaaCAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGACTGCGGGAGTATcc                                                                                                 >  5:362804/1‑139 (MQ=255)                             aacaacATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATccc                                                                                                >  1:122898/1‑139 (MQ=255)                              acaacaTGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCg                                                                                               <  7:397238/139‑1 (MQ=255)                              acaacaTGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCg                                                                                               <  8:70880/139‑1 (MQ=255)                               caacaTGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCg                                                                                               >  6:341221/1‑138 (MQ=255)                                   aTGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACtt                                                                                          <  5:52463/139‑1 (MQ=255)                                       ttAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGc                                                                                      >  5:10265/1‑139 (MQ=255)                                          aCAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCttt                                                                                   >  1:412888/1‑139 (MQ=255)                                             gCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAg                                                                                >  6:110352/1‑139 (MQ=255)                                             gCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAg                                                                                <  6:294921/139‑1 (MQ=255)                                              cctcctCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGc                                                                               >  7:179912/1‑139 (MQ=255)                                              cctcctCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGc                                                                               >  1:340441/1‑139 (MQ=255)                                               ctcctcATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCg                                                                              <  1:201034/139‑1 (MQ=255)                                                tcctcATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCgg                                                                             >  1:430232/1‑139 (MQ=255)                                                tcctcATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCgg                                                                             >  7:390022/1‑139 (MQ=255)                                                tcctcATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCgg                                                                             >  2:288089/1‑139 (MQ=255)                                                tcctcATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCgg                                                                             >  6:327680/1‑139 (MQ=255)                                                tcctcATATTTTCGTTACATAAACGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCgg                                                                             >  5:40452/1‑139 (MQ=255)                                                  ctcATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTc                                                                           <  5:80879/139‑1 (MQ=255)                                                     atatTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcag                                                                         <  6:3434/138‑1 (MQ=255)                                                       atTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcagcag                                                                      <  8:283326/139‑1 (MQ=255)                                                        ttttCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcagcag                                                                      <  6:49389/138‑1 (MQ=255)                                                        ttttCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcagcag                                                                      <  2:412888/138‑1 (MQ=255)                                                        ttttCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcagcag                                                                      <  2:435607/138‑1 (MQ=255)                                                            cGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcag                                                                         <  4:221977/131‑1 (MQ=255)                                                            cGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTcag                                                                         >  3:221977/1‑131 (MQ=255)                                                            cGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 >  1:259759/1‑139 (MQ=255)                                                            cGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 >  2:169020/1‑139 (MQ=255)                                                            cGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 >  3:345122/1‑139 (MQ=255)                                                            cGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 >  3:314410/1‑139 (MQ=255)                                                             gTTACATAATCGGGTGATGTTGAACCTGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 <  8:124606/138‑1 (MQ=255)                                                             gTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 <  5:341221/138‑1 (MQ=255)                                                             gTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 <  8:433657/138‑1 (MQ=255)                                                             gTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 <  5:185265/138‑1 (MQ=255)                                                             gTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 <  2:430232/138‑1 (MQ=255)                                                             gTTACATAAACGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGaa                                                                 <  6:40452/138‑1 (MQ=255)                                                                   tAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCTAt                                                          <  4:345122/139‑1 (MQ=255)                                                                   tAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAt                                                          <  4:314410/139‑1 (MQ=255)                                                                   tAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAt                                                          <  7:35838/139‑1 (MQ=255)                                                                     aTCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAtt                                                         <  4:424929/138‑1 (MQ=255)                                                                     aTCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAtt                                                         <  8:365336/138‑1 (MQ=255)                                                                     aTCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAtt                                                         <  8:118955/138‑1 (MQ=255)                                                                      tCGGGTGATTTTGAAAATTACGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTTACGTCTGAGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGAAGCAGAACAGCCATTGc                                                       <  8:168959/139‑1 (MQ=255)                                                                       cGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAg                                                                                >  5:258439/1‑113 (MQ=255)                                                                       cGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAg                                                                                <  6:258439/113‑1 (MQ=255)                                                                        gggTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGccc                                                     <  5:96239/139‑1 (MQ=255)                                                                         ggTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCa                                                    >  6:256924/1‑139 (MQ=255)                                                                           tGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCAt                                                   >  1:391586/1‑138 (MQ=255)                                                                             aTGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATaaa                                                <  2:242870/139‑1 (MQ=255)                                                                                   aaCATTAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGt                                           <  8:179912/138‑1 (MQ=255)                                                                                   aaCATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGt                                           <  1:418301/138‑1 (MQ=255)                                                                                   aaCATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGt                                           >  8:328452/1‑138 (MQ=255)                                                                                    aCATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCa                                         <  2:259759/139‑1 (MQ=255)                                                                                     cATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAg                                        <  5:110352/139‑1 (MQ=255)                                                                                     cATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAg                                        <  5:327680/139‑1 (MQ=255)                                                                                        gAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCg                                      >  1:310672/1‑138 (MQ=255)                                                                                        gAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCAGAAGGCGTTCAGCg                                      >  2:113396/1‑138 (MQ=255)                                                                                              tGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGt                                           >  5:60311/1‑127 (MQ=255)                                                                                              tGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGt                                           <  6:60311/127‑1 (MQ=255)                                                                                                      tAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGCCCCTGTGa                       <  2:340441/139‑1 (MQ=255)                                                                                                      tAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGCCCCTGTGa                       <  5:256924/139‑1 (MQ=255)                                                                                                      tAAGACGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGCCCCTGTGa                       <  1:288089/139‑1 (MQ=255)                                                                                                           cGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAt                                                          >  1:62273/1‑99 (MQ=255)                                                                                                           cGATTGATAAAATTTGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCAt                                                          <  2:62273/99‑1 (MQ=255)                                                                                                                 aTAAAATTTGGCCCGTATAAAGCTTTTTTTCCGCTCACGTCTGCGGGAGTATCCCGGAGTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGACCAGACATCCGGCAGCGTAAATCCCCCTGTGATGGATttcat             <  6:203339/138‑3 (MQ=255)                                                                                                                       tttGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGccc                             >  5:238652/1‑116 (MQ=255)                                                                                                                       tttGGCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGccc                             <  6:238652/116‑1 (MQ=255)                                                                                                                           gCCAGTATAAAGCTTTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGCCCCTGTGATGGATTTCTTCTCATCATCAg  >  7:54719/1‑139 (MQ=255)                                                                                                                                        |                                                                                                                              TAAGCCTAAAATCACCATTCTTAAGATAAACAACATGTTTAACAGCCTCCTCATATTTTCGTTACATAATCGGGTGATGTTGAACATGAAGTTTGCCGAAATAAGACGATTGATAAAATTTGGCCAGTATAAAGC‑TTTTTTCCGCTGACGTCTGCGGGAGTATCCCGTACTTTTGCTTTCAGCGGTCAGCAGCAGAACAGCCATTGCCCATAAAGCGGTCAGCGTAAATGCCCCTGTGATGGATTTCTTCTCATCATCAG  >  CP006881/1901043‑1901302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑