Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,048,507 (A)7→8 intergenic (+219/+97) U712_10130 → / ← U712_10135 Hypothetical Protein/FMN‑dependent NADH‑azoreductase 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,048,5001.A99.0% 317.6 / ‑3.4 101intergenic (+212/+104)U712_10130/U712_10135Hypothetical Protein/FMN‑dependent NADH‑azoreductase 1
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base A (41/59);  total (41/60)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.28e-01

Only 100 of 112 total aligned reads displayed.

CTTCTTTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAT‑AAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAGATCTTTTGCTT  >  CP006881/2048363‑2048632
                                                                                                                                          |                                                                                                                                    
cttcttTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGATCAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAt                                                                                                                                       >  1:132386/1‑138 (MQ=255)
cttcttTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAt                                                                                                                                       >  7:64985/1‑138 (MQ=255)
cttcttTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAt                                                                                                                                       >  7:277706/1‑138 (MQ=255)
cttcttTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAt                                                                                                                                       >  1:45/1‑138 (MQ=255)
   cttTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAT‑aaa                                                                                                                                   >  6:367684/1‑138 (MQ=255)
     ttAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAAAACCTGACAATTCGACAAACAAAAAATATATTACaaa‑aaaaa                                                                                                                                 >  6:67529/1‑138 (MQ=255)
       aaTATAGTACACCATCAGGCGCTTTTAATAAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAT‑aaaaaaa                                                                                                                               >  8:175717/1‑138 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTTAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  2:196467/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  2:159716/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  8:74322/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  3:180249/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  3:407527/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  5:202328/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  7:161926/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  7:162078/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  7:274316/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  7:326283/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  7:50953/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  8:263721/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  1:410515/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCtt                                                                                                                        >  1:151047/1‑139 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAT‑aa                                                                                                                                    >  6:296303/1‑126 (MQ=255)
              tACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAT‑aa                                                                                                                                    <  5:296303/126‑1 (MQ=255)
                cacCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCttt                                                                                                                       <  8:277706/138‑1 (MQ=255)
                   cATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTg                                                                                                                   >  5:418050/1‑139 (MQ=255)
                   cATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTg                                                                                                                   >  3:327702/1‑139 (MQ=255)
                   cATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTg                                                                                                                   >  3:127103/1‑139 (MQ=255)
                   cATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTg                                                                                                                   >  7:255175/1‑139 (MQ=255)
                     tCAGGCGCTTTTAATCAATAGGTAAGAACAATTGTTTATAAAAACTTTTTCCAGAGAATAAAACTGTTTTTTCTACAAAATACCGGACAATTAGACAAACAAAAAATATATTACAATAAAAAAAATATCCTGTAtttc                                                                                                                  >  6:47846/1‑136 (MQ=255)
                     tCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAt                                                                                                                                       >  1:303262/1‑117 (MQ=255)
                     tCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAt                                                                                                                                       <  2:303262/117‑1 (MQ=255)
                     tCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGc                                                                                                                  >  6:311471/1‑138 (MQ=255)
                       aGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTaa                                                                                                               <  5:396141/139‑1 (MQ=255)
                          cgcTTTTAATCAAGATGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAg                                                                                                            <  7:315459/139‑1 (MQ=255)
                            cTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGc                                                                                                           >  8:259094/1‑138 (MQ=255)
                             ttttAATCAAGCGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGa                                                                                                         >  2:205529/1‑139 (MQ=255)
                             ttttAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATATCCTTTATTGCTAAAAGCg                                                                                                          >  1:438401/1‑138 (MQ=255)
                             ttttAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCg                                                                                                          >  8:348555/1‑138 (MQ=255)
                               ttAATAAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAAt                                                                                                       >  1:268017/1‑139 (MQ=255)
                                  aTCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGa                                                                                                     <  4:350827/138‑1 (MQ=255)
                                   tCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGat                                                                                                    >  3:136041/1‑138 (MQ=255)
                                      agagGTCAGAACAATTTTTTAGAAAAACTTTTTCCAGAGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGattatt                                                                                                <  5:47846/139‑1 (MQ=255)
                                      agagGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGattatt                                                                                                <  5:49772/139‑1 (MQ=255)
                                       gagGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTAttt                                                                                               >  3:369006/1‑139 (MQ=255)
                                         ggTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttc                                                                                             <  2:438401/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  1:205529/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  8:441885/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  7:422111/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  7:74322/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  2:442376/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  1:435976/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  7:227228/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  4:136041/139‑1 (MQ=255)
                                           tCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTACAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  4:118557/139‑1 (MQ=255)
                                           tCAGAACAATTGTCTAGAAAAACTTTTTCCCGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttctt                                                                                           <  1:338584/139‑1 (MQ=255)
                                             aGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTACAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTttcttc                                                                                          <  1:292666/138‑1 (MQ=255)
                                                aCAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATAGCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCtata                                                                                      <  3:131922/139‑1 (MQ=255)
                                                   aTTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTa                                                                                   <  6:202328/139‑1 (MQ=255)
                                                    ttGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGCCAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTaa                                                                                  >  2:341432/1‑139 (MQ=255)
                                                    ttGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTaa                                                                                  <  8:50953/139‑1 (MQ=255)
                                                    ttGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTaa                                                                                  <  4:391493/139‑1 (MQ=255)
                                                    ttGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTaa                                                                                  <  3:102177/139‑1 (MQ=255)
                                                         tAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAAtgtg                                                                              >  7:415805/1‑138 (MQ=255)
                                                         tAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAAtgtg                                                                              >  7:21269/1‑138 (MQ=255)
                                                            aaaaaCTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGtata                                                                          <  8:244887/139‑1 (MQ=255)
                                                            aaaaaCTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGtata                                                                          <  1:41418/139‑1 (MQ=255)
                                                                     ttCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACaaaaa                                                                  <  7:175717/138‑1 (MQ=255)
                                                                       ccAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGa                                                                <  1:196467/138‑1 (MQ=255)
                                                                       ccAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGa                                                                <  1:159716/138‑1 (MQ=255)
                                                                        cAGTGAATATAACTTTTTTTTCTCCAAATTACCTTACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACt                                                              <  2:302340/139‑1 (MQ=255)
                                                                          gTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTcc                                                            <  8:21269/139‑1 (MQ=255)
                                                                                 aaaCTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTTCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     <  4:250988/139‑1 (MQ=255)
                                                                                 aaaCTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTTCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     <  2:435287/139‑1 (MQ=255)
                                                                                 aaaCTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     <  8:274316/139‑1 (MQ=255)
                                                                                 aaaCTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     <  8:366409/139‑1 (MQ=255)
                                                                                 aaaCTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     <  8:64985/139‑1 (MQ=255)
                                                                                 aaaCTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     <  2:151047/139‑1 (MQ=255)
                                                                                       ttttttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACaaaa                                                                   <  4:87586/119‑1 (MQ=255)
                                                                                       ttttttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACaaaa                                                                   >  3:87586/1‑119 (MQ=255)
                                                                                       ttttttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGa                                                >  6:402601/1‑138 (MQ=255)
                                                                                       ttttttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGa                                                >  6:34585/1‑138 (MQ=255)
                                                                                         ttttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATa                                              <  2:108692/138‑1 (MQ=255)
                                                                                          tttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAg                                             <  2:132386/138‑1 (MQ=255)
                                                                                          tttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAg                                             <  4:180249/138‑1 (MQ=255)
                                                                                          tttCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAg                                             <  4:407527/138‑1 (MQ=255)
                                                                                            tctcCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTaa                                                                                  >  3:65156/1‑99 (MQ=255)
                                                                                            tctcCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTaa                                                                                  <  4:65156/99‑1 (MQ=255)
                                                                                                 aaaaTACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTg                                     >  6:50494/1‑139 (MQ=255)
                                                                                                   aaTACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATATCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGc                                   <  5:367684/139‑1 (MQ=255)
                                                                                                   aaTACCTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGc                                   <  6:348560/139‑1 (MQ=255)
                                                                                                        cTGACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTttat                              >  3:279161/1‑139 (MQ=255)
                                                                                                          gACAATTCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGt                                                     >  1:350823/1‑114 (MQ=255)
                                                                                                               ttCGACAAACAAAAAATATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAAtt                       >  8:369920/1‑139 (MQ=255)
                                                                                                                      aacaaaAAATATATTACAAT‑AAAAAAATAGCCTTTCTTGCTAAAAGCGAATGAGTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTgcagca               <  5:67529/139‑1 (MQ=255)
                                                                                                                         aaaaaaTATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTTTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAg             <  5:34585/139‑1 (MQ=255)
                                                                                                                         aaaaaaTATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAg             <  8:255175/139‑1 (MQ=255)
                                                                                                                         aaaaaaTATATTACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAg             <  8:326283/139‑1 (MQ=255)
                                                                                                                                   ttACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAGATCTTTTGct   <  2:45/139‑1 (MQ=255)
                                                                                                                                   ttACAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAGATCTTTTGc    <  1:11176/138‑1 (MQ=255)
                                                                                                                                     aCAATAAAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAGATCTTTTGctt  <  4:228423/138‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                    
CTTCTTTAATATAGTACACCATCAGGCGCTTTTAATCAAGAGGTCAGAACAATTGTTTAGAAAAACTTTTTCCAGTGAATAAAACTGTTTTTTCTCCAAAATACCTGACAATTCGACAAACAAAAAATATATTACAAT‑AAAAAAATAGCCTTTATTGCTAAAAGCGAATGATTATTTTCTTCTATATTAATGTGTATATACAAAAAGACTCCTATTTGTAACGATAGGAGTCTTGGCTTTATTAGAATTTTGCAGCAAGATCTTTTGCTT  >  CP006881/2048363‑2048632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑