| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 2417910 = | 15 (0.160) | 48 (0.530) +CAT |
29/246 | 1.1 | 76.6% | intergenic (‑159/‑26) | U712_12310/U712_12315 | Cytochrome c‑550/Hypothetical Protein |
| ? | CP006881 | = 2417918 | NA (NA) | intergenic (‑167/‑18) | U712_12310/U712_12315 | Cytochrome c‑550/Hypothetical Protein | |||||
CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP006881/2418045‑2417910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACAT < CP006881/2417918‑2417782 ||| CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTGATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 8:206975/138‑1CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 5:223162/138‑1CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 2:37580/138‑1CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 7:104742/138‑1CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 6:319863/138‑1CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 4:142296/138‑1CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACA < 4:101099/138‑1 GTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATT < 2:176837/139‑1 CTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATA < 8:425978/136‑1 TTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAA < 5:200106/136‑1 TTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGGCATTTGCAAATGAACATTGTTGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGA < 8:20554/138‑1 AAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAA < 7:441255/139‑1 AAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAA < 8:125330/139‑1 AAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAA < 4:189022/139‑1 AAAAGATATATGGATAATATGCCTTTATTATACTGAAAAATGATGTCATTTTCAAATGAACATAGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAA < 1:22598/139‑1 AAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAA < 8:40267/139‑1 GGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTA < 2:72982/138‑1 AATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGAT > 5:54959/1‑139 CTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCA > 3:408974/1‑139 CTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCA > 7:147578/1‑139 TATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGT > 3:373838/1‑139 TATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGT > 7:32352/1‑139 TATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGT > 5:227858/1‑139 taTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTT < 6:410348/137‑1 CTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATT < 1:4385/139‑1 CTGAAAAATGATCTCATTTGCAAATGAACATTGTCGTGAAAAATTTAAAAATCTAATTCCATATTTTCTATTGTAAGAGTATACAATACATTATACAAAAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTAT > 4:357886/1‑138 AAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCA < 2:1302/138‑1 TCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATA < 5:394472/138‑1 TCATTTGCAAATGAACAATGTGGTGAAAAATTTCAAAATCTAATTCAATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGAATGTTTCTATTCAATTTTGTATA > 7:270879/1‑138 ATTGTGTTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAAC < 4:245590/139‑1 TGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTT > 6:158758/1‑139 GTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTT < 4:373838/138‑1 GTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTT < 4:273685/138‑1 GTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTT < 8:32352/138‑1 GTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTT < 6:227858/138‑1 TGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTA < 8:388805/139‑1 aaTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAA < 4:10884/137‑1 ATTTCAAAATCTTATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAA < 8:84592/139‑1 ATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAA < 1:283732/139‑1 TATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAA > 7:28527/1‑138 TATTTTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAA > 5:289521/1‑138 TTCTATTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAAT < 4:408974/138‑1 TTGTAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTT < 8:147578/138‑1 TAAGCGTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAA > 3:142604/1‑139 tTATAAAATTAATTATAAAATAGAATATAAAGGATATTAGAGATTTAGGAATGTTTATATTCAATTTTTTATAAAGTGTTAATAAAAAACTTTTGTATATCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAG < 6:395841/137‑1 GTATACAATACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGA < 5:158758/139‑1 GTATACAATAAATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAATAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGA < 2:374235/139‑1 CAATACATTACACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGT < 1:218801/139‑1 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTA > 7:392437/1‑139 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTA > 8:361545/1‑139 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTT > 5:395841/1‑138 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTT < 5:16275/137‑1 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTT > 6:16275/1‑137 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTT > 5:297704/1‑122 TACATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTT < 6:297704/122‑1 CATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGATTTAGAAGTGTTTACA < 4:141021/139‑1 CATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACA > 4:68791/1‑139 ATTATACAATATAATAAAAAGGGGATTAGAGAATTAGGCATGTTTCTAATCAATTTTGTATAAACTGTGAATAAAAAACTTTTGTATAGCAAACCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACAT < 5:437114/139‑1 ATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACA > 3:185145/1‑138 ATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACA > 5:116311/1‑138 ATTATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATATTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACA > 5:290331/1‑138 ATTATACAATAGAATAAAAAGCATATTAGAGATTTAGGCATGTTTCTATTCAATTTAGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCAATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTCTTAACA > 8:426728/1‑138 ||| CGTTCTTCTTTTTTTAAAAAGATATATGGATAATATGCCTTTATTTTACTGAAAAATGATGTCATTTGCAAATGAACATTGTGGTGAAAAATTTCAAAATCTAATTCCATATTTTCTATTGTAAGCGTATACAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP006881/2418045‑2417910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATACAATAGAATAAAAAGGATATTAGAGATTTAGGCATGTTTCTATTCAATTTTGTATAAAGTGTGAATAAAAAACTTTTGTATAGCAATCCATTTACTTTTTGTAAAAATAAGTTAGAATTAGAAGTGTTTACAT < CP006881/2417918‑2417782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |