Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006881 | 2,173,385 | G→T | G121G (GGC→GGA) | U712_10870 ← | Bifunctional protein BirA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 2,173,385 | 0 | G | T | 97.6% | 122.0 / NA | 41 | G121G (GGC→GGA) | U712_10870 | Bifunctional protein BirA |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (22/18); total (23/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCTGCACAACAGCTACTGCAGCAAGTAATGTGAGCTGCGGTGTTTTTTGAAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAATGCCATTTCCCTCTTGAGAATGCCATACCCTAGACATTCGACCTCTGCCGGCTGTTTGTTTGTCAGCCACCACAAGAGTGCCTTCCGGTGCGTTATTATTCGCAAGCTCATGCGCCGTTTTTTGCGTGCTTGAAATAACGTCTTGATAAATAAGATGCTGGCCCATTACTTCCGTT > CP006881/2173252‑2173514 | ccTGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATTCCATACCCTAGACATTCGGCCCCTTCCGGc > 1:58054/1‑139 (MQ=255) tGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCCAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATTCCATACCCTAGACATTCGGCCCCTGCCCGcgg > 6:9032/1‑137 (MQ=255) tGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCCTACAAACACCGTTTCCTTCTTGAGCATGCCATACCCTAGCCATTAGGCCCCGTCCGGCtg > 4:146728/1‑139 (MQ=255) tGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCtg > 7:50631/1‑139 (MQ=255) tGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCtg > 7:44210/1‑139 (MQ=255) tGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCGTCCGGcgg > 1:106015/1‑137 (MQ=255) tGCACAACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATAAGGCTCATCCAAACCCCGTTTCCTTGTTGAGAATGCCATACCCGAGACATTCGGCCCCGTCCGGcgg > 1:370288/1‑137 (MQ=255) cacaACAGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCtgtt > 7:50230/1‑139 (MQ=255) aGCTACTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGtttgtttg < 7:192959/139‑1 (MQ=255) cTGCAGGAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGGCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGc < 2:283486/139‑1 (MQ=255) cTGCAGCAAGCAGAGTCAGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGATTATGCAATACCCTAGACATTCGGCCCCTTCCGGCTgtttttttttattg < 1:177909/139‑7 (MQ=255) tcaGCTGCGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGcc < 8:50631/137‑1 (MQ=255) cGGTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCg < 8:50230/137‑1 (MQ=255) cGGTGTTATTTGGCGCGGAATGACAGGCCGCAAAATCAGGCTCCTCCAACCACCTTTTCCTTCTTGACATTGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCg < 8:437665/137‑1 (MQ=255) ggTGTTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCGGTTTTTTTGTAAGCCACCACAAGGGTGCCTTCCgggg > 4:89143/1‑137 (MQ=255) gtgtTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGATAATTCCATACCCTAGACATTCGGCCCCTTCCGGCTGGTTGTTTGTAAGCCACCACAAGGGTGCCTTCCGGTGc > 3:100291/1‑139 (MQ=255) gtgtTTTTTGGAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGc < 3:89143/139‑1 (MQ=255) ggCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGttat > 3:66093/1‑121 (MQ=255) ggCCGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGttat < 4:66093/121‑1 (MQ=255) cGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGt > 2:218620/1‑115 (MQ=255) cGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGt < 1:218620/115‑1 (MQ=255) cGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATga < 7:103643/135‑2 (MQ=255) cGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATga > 8:103643/1‑134 (MQ=255) cGCAAAATCAGGCTCATCCAAACACCGTTTCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCg > 2:292414/1‑139 (MQ=255) aGGCTCATCCAAACTCCGTTTCCTTCTAGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGc < 3:368997/138‑1 (MQ=255) ccgtttCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGt < 1:292414/136‑1 (MQ=255) cgtttCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCTTTTTTTTCGTGCTTTAAAGAACGt > 8:77809/3‑138 (MQ=255) tttCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGc < 7:193452/76‑1 (MQ=255) tttCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGc > 8:193452/1‑76 (MQ=255) tttCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTcat > 8:3426/1‑137 (MQ=255) tttCCTTCTTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACCTcat > 7:285150/1‑137 (MQ=255) cttctTGAGAATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTCATggt < 5:9032/136‑3 (MQ=255) gagaATGCCATACCCTCGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTCATGgtaaata < 2:370288/137‑1 (MQ=255) gagaATGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGGGTGCTTGAAAGAACGTCATGgtaaat > 3:93439/1‑136 (MQ=255) tGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTCATGgtaaata < 4:196399/132‑1 (MQ=255) tGCCATACCCTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTCATGgtaaata > 3:196399/1‑132 (MQ=255) cccTAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGTACGTCATGGTAAATAAGATGCTGGCCCAt < 1:98030/139‑1 (MQ=255) tAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAATAACGTCATGGTAAATAAGATGCTGGCCCagcac > 4:378553/1‑135 (MQ=255) tAGACATTCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTCATGGTAAATAAGATGCTGGCCCATCAc < 6:69217/139‑1 (MQ=255) tCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTTTTTTGCGTGCTTGAAAGAACGTCATGGTAAATAAGATGCTGGCCCATCACTTCCGtt > 7:2745/1‑139 (MQ=255) tCGGCCCCTTCCGGCTGTTTGTTTGTCAGCCACCACAAGGGTGCCTTCCGGTGCGTTATTATTCGCGAGCTCATGAGCCGTGGTTTGGGTGCGTGAAAGAACGTCATGGTAAATAAGATGCTGGCCCATCACTTACGtt > 4:24353/1‑139 (MQ=255) | CCTGCACAACAGCTACTGCAGCAAGTAATGTGAGCTGCGGTGTTTTTTGAAGCGGAATGTCAGGCCGCAAAATCAGGCTCATCCAAATGCCATTTCCCTCTTGAGAATGCCATACCCTAGACATTCGACCTCTGCCGGCTGTTTGTTTGTCAGCCACCACAAGAGTGCCTTCCGGTGCGTTATTATTCGCAAGCTCATGCGCCGTTTTTTGCGTGCTTGAAATAACGTCTTGATAAATAAGATGCTGGCCCATTACTTCCGTT > CP006881/2173252‑2173514 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |