| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,191,964 | T→A | I11I (ATA→ATT) | U712_10980 ← | N‑(5'‑phosphoribosyl)anthranilate isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,191,964 | 0 | T | A | 98.6% | 213.5 / ‑4.4 | 69 | I11I (ATA→ATT) | U712_10980 | N‑(5'‑phosphoribosyl)anthranilate isomerase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base A (29/39); total (29/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
TTTTTCGACACAAACTTGACTCAGCCACTTTTTCACATCTTGCGGAGATACTTTTCGGTAGCTTTCAGCAAAAATAAAGCCCAGATAATCCGCCTGTGAGTCTGCTGCAAGCTGCAAATCCTGCAGTGACCGTATGCCGCAATATTTTAATGCCGGCTTCTTCACATCCTCACTCCCCAAACAAAGCATGGATTGCTTTTTGCTGTGATGTTTGTCTCATCAATGATTCACCAATAAGCACAGCTCGTGCTCCATGTTCTTTGACA > CP006881/2191832‑2192097 | tttttCGACACGAACTTGGTTCAGCCATTTTTTCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAAtac < 8:71334/137‑3 (MQ=255)tttttCGACACGAACTTGGTTCAGCCATTTTTTCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCg > 4:438543/1‑139 (MQ=255) tCGACACGAACTTGGTTCAGCCATTTTTTCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCaa > 8:190192/1‑138 (MQ=255) ggttCAGCCATTTTTTCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGcc < 6:240122/134‑1 (MQ=255) aCTCAGCCACTTTTTCACATCTTGCGGAGATACTTTTCGGTAGCTTTCAGCAAAAATAAAGCCCAGATAATCCGCCTGTGAGTCTGCTGCAAGCTGCAAATCCTGCAGTGACCGTATGCCGCAATATTTTAATGCCGGc < 3:100151/139‑1 (MQ=255) gCCATTTTTTCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCa < 3:439239/118‑1 (MQ=255) ccATTTTTTCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGtttctt > 6:272529/1‑138 (MQ=255) cattatttCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTca < 1:287172/134‑1 (MQ=255) ttttttCACATCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTcaca < 7:190192/138‑1 (MQ=255) cacaTCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTc < 4:49789/138‑1 (MQ=255) cacaTCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTc < 5:272529/138‑1 (MQ=255) acaTCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCa < 2:226304/138‑1 (MQ=255) acaTCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCAc < 6:132314/139‑1 (MQ=255) aTCTTCCGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTc > 6:429256/1‑139 (MQ=255) ccGGAGATACTTTTCGTTTGCTTTCAGCAGAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTcc < 8:212658/134‑1 (MQ=255) ccGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTcc < 8:302110/134‑1 (MQ=255) ccGGAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGACTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTcc < 8:106418/134‑1 (MQ=255) ggAGATACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCATTTAGTGACCGAATACCGCAATATTTTTATGCCGGTTTCTTCACAACCTCACTCCCtaaac < 7:6557/139‑1 (MQ=255) gaTACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCtaaaca > 7:413867/1‑137 (MQ=255) tACTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGc < 8:413867/139‑1 (MQ=255) aCTTTTCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATTCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCa > 4:32547/1‑139 (MQ=255) ttttCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATg > 6:18173/1‑139 (MQ=255) ttttCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATg > 4:142901/1‑139 (MQ=255) tttCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCa > 2:126483/1‑120 (MQ=255) tttCGTTTGCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCa < 1:126483/120‑1 (MQ=255) tgCTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCt < 6:236134/137‑1 (MQ=255) cTTTCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCttt < 1:7885/138‑1 (MQ=255) tCAGCAAAAATAAATCCTAGGTAATCAGCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCtttacg < 1:439194/138‑4 (MQ=255) tcagCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGAt > 8:421682/4‑139 (MQ=255) tcagCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGAt > 7:231765/4‑139 (MQ=255) tcagCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGAATTGATTGCTTTCCGCTGAGAAGTTTGTCTCATCAATGa > 2:210275/4‑138 (MQ=255) gcatgtgATTCAGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCTATGATTCa < 3:136078/136‑1 (MQ=255) gCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCa < 7:75322/139‑1 (MQ=255) gCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCa < 2:171726/139‑1 (MQ=255) gCCTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCa < 8:231765/139‑1 (MQ=255) ccTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCAc > 3:274852/1‑81 (MQ=255) ccTGTGATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCAc < 4:274852/81‑1 (MQ=255) tgtgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCAcc > 5:129009/1‑138 (MQ=255) gtgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTcc < 3:351695/81‑1 (MQ=255) gtgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTcc > 4:351695/1‑81 (MQ=255) tgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt < 3:32547/139‑1 (MQ=255) tgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt < 3:236920/139‑1 (MQ=255) tgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt < 3:142901/139‑1 (MQ=255) tgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt < 5:18173/139‑1 (MQ=255) tgATTCCGCCGCAAGCTGCAAATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt < 2:180546/139‑1 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt < 6:220417/129‑1 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAt > 5:220417/5‑133 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAgta > 3:313926/5‑136 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAgta > 5:320007/5‑136 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAGAAGtac > 2:53739/5‑139 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTATGTCTCATCAATGATTCACCGATAAGtac > 8:213944/5‑139 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCATAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAgta > 7:366902/5‑136 (MQ=255) gcaagcttcaaATCCTTTAGTGTCCGAATACCGAAATATTTTAATGCCGGTTTCTTCACAACGTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTTAGAAGTTTTTCTCATCAATTATTCACCGATAAGTACAGCt < 7:174479/139‑1 (MQ=255) aagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCg < 2:129384/139‑1 (MQ=255) cgctgcaaATCCTTTAGTGACCGAATACCGCAATATTGTAATGCCGGGTTCTTCACAACCTCCCTCCCTAAACAAAGCATGGATTGCGTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCgc < 6:90052/138‑2 (MQ=255) agctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCgc < 6:169555/139‑2 (MQ=255) tgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCgcgcc > 7:322020/1‑138 (MQ=255) ctttaGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGtt > 3:123493/5‑138 (MQ=255) ttaGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCtaa > 7:207779/3‑58 (MQ=25) ttaGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCtaa < 8:207779/56‑1 (MQ=255) ttaGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTcat > 2:27718/3‑137 (MQ=255) gTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGa < 6:320007/139‑1 (MQ=255) aCCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa > 6:249820/1‑138 (MQ=255) aCCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa > 5:44301/1‑138 (MQ=255) aCCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa < 8:322020/138‑1 (MQ=255) ccGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGa < 6:182234/63‑1 (MQ=255) ccGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGa > 5:182234/1‑63 (MQ=255) ccGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCa < 7:234586/101‑1 (MQ=255) ccGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCa > 8:234586/1‑101 (MQ=255) | TTTTTCGACACAAACTTGACTCAGCCACTTTTTCACATCTTGCGGAGATACTTTTCGGTAGCTTTCAGCAAAAATAAAGCCCAGATAATCCGCCTGTGAGTCTGCTGCAAGCTGCAAATCCTGCAGTGACCGTATGCCGCAATATTTTAATGCCGGCTTCTTCACATCCTCACTCCCCAAACAAAGCATGGATTGCTTTTTGCTGTGATGTTTGTCTCATCAATGATTCACCAATAAGCACAGCTCGTGCTCCATGTTCTTTGACA > CP006881/2191832‑2192097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |