Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006881 | 2,192,070 | C→T | V228V (GTG→GTA) | U712_10985 ← | Indole‑3‑glycerol phosphate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 2,192,070 | 0 | C | T | 98.5% | 205.3 / NA | 68 | V228V (GTG→GTA) | U712_10985 | Indole‑3‑glycerol phosphate synthase |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (34/32); minor base G (0/1); total (35/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCTGCAAGCTGCAAATCCTGCAGTGACCGTATGCCGCAATATTTTAATGCCGGCTTCTTCACATCCTCACTCCCCAAACAAAGCATGGATTGCTTTTTGCTGTGATGTTTGTCTCATCAATGATTCACCAATAAGCACAGCTCGTGCTCCATGTTCTTTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAGTGATTCTTTCGGAGCAAGAGATGCGATTTGTTCTGTCTGCATGATAGAGGTTTCAAAAG > CP006881/2191934‑2192203 | cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGAGAAGtac > 2:53739/5‑139 (MQ=255) cgccgcaagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTATGTCTCATCAATGATTCACCGATAAGtac > 8:213944/5‑139 (MQ=255) gcaagcttcaaATCCTTTAGTGTCCGAATACCGAAATATTTTAATGCCGGTTTCTTCACAACGTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTTAGAAGTTTTTCTCATCAATTATTCACCGATAAGTACAGCt < 7:174479/139‑1 (MQ=255) aagctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCg < 2:129384/139‑1 (MQ=255) cgctgcaaATCCTTTAGTGACCGAATACCGCAATATTGTAATGCCGGGTTCTTCACAACCTCCCTCCCTAAACAAAGCATGGATTGCGTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCgc < 6:90052/138‑2 (MQ=255) agctgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCgc < 6:169555/139‑2 (MQ=255) tgcaaATCCTTTAGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCgcgcc > 7:322020/1‑138 (MQ=255) ctttaGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGtt > 3:123493/5‑138 (MQ=255) ttaGTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTcat > 2:27718/3‑137 (MQ=255) gTGACCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGa < 6:320007/139‑1 (MQ=255) aCCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa < 8:322020/138‑1 (MQ=255) aCCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa > 5:44301/1‑138 (MQ=255) aCCGAATACCGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa > 6:249820/1‑138 (MQ=255) ccGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACaaatgttaa < 3:185505/138‑1 (MQ=255) ccGCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACaaatgttaa < 1:69757/138‑1 (MQ=255) gCAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACaaatgttaaatg > 8:423483/1‑139 (MQ=255) cAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCa > 6:367069/1‑115 (MQ=255) cAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCa < 5:367069/115‑1 (MQ=255) cAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACaaatgttaaatgt > 6:430775/1‑139 (MQ=255) cAATATTTTAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGAATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATGCACCGATAAGTACAGCTCGCTCCCCATGTTCATTGACaaatgtgaaatgt > 4:172714/1‑139 (MQ=255) ttAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTa > 3:379803/1‑136 (MQ=255) tAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCg < 8:60034/100‑1 (MQ=255) tAATGCCGGTTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCg > 7:60034/1‑100 (MQ=255) tAATGCCGGCTTCTTCACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAg < 1:153766/138‑1 (MQ=255) ggtttcttcACAACCTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTAACCGATAAGAACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTATAAAGAACCGAt > 3:426406/4‑138 (MQ=255) aaccTAACTCCCTAAACAATGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACAGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCt < 8:366902/137‑1 (MQ=255) aacatCACTACCTAAAAATAGAATTGTTTTCTTTACGCTGAGTAGTTTGTCTCATCTATTATTAACAGATAAGTACAGCTCGAGCCCCATGTTCATTGACTAATGTTATATGTTCTAAAGAACCGATTGCGCTTTCGCt < 4:426406/135‑1 (MQ=255) ccTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACaaatgttaaatg > 4:229811/1‑110 (MQ=255) ccTCACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACaaatgttaaatg < 3:229811/110‑1 (MQ=255) cACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAATTGTTCTAAAGCACCTATTCCGCTTTCGCTGACaa > 4:32606/1‑139 (MQ=255) cACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGAc > 4:348342/1‑137 (MQ=255) cACTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACaa > 4:193373/1‑139 (MQ=255) aCTCCCTAAACAAAGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACa < 4:123493/137‑1 (MQ=255) taaacaaaGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCaagga > 4:221985/2‑135 (MQ=255) taaacaaaGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCaagga < 6:129009/138‑5 (MQ=255) aaacaaaGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCaaggat > 3:146451/1‑134 (MQ=255) aacaaaGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGAtt < 6:44301/139‑1 (MQ=255) aaGCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCttt > 2:101437/1‑139 (MQ=255) gCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa < 3:289404/81‑1 (MQ=255) gCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa < 7:388809/81‑1 (MQ=255) gCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa > 4:289404/1‑81 (MQ=255) gCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACa > 8:388809/1‑81 (MQ=255) gCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGCCAAGCAAGGATTCTTTCg > 7:234827/1‑139 (MQ=255) gCATGGATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCg > 2:426127/1‑139 (MQ=255) ggATTGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGaac > 1:265897/1‑137 (MQ=255) ttGCTTTACGCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGaac > 7:140028/1‑134 (MQ=255) ctttacgCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACgaga > 8:432638/7‑137 (MQ=255) tacgCTGAGATGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGAt < 1:27718/134‑1 (MQ=255) tacgCTGAGAAGTTTGTCTCTTCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGc > 6:222461/4‑139 (MQ=255) tacgCTGAGAAGTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGAt < 5:429256/134‑1 (MQ=255) gCTGAGAAGTTTGTCTCTTCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGAt < 5:222461/139‑1 (MQ=255) agaagTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCCTGTTCATTGACAAATGTTAAATTTTCTAAAGAACCGATTCCGCTTTCCCTGACAAGCAAGGATACTTTCGGAACGAGAGATGCGATTTGt > 4:462/5‑139 (MQ=255) agaagTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGa > 7:193172/5‑81 (MQ=255) agaagTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGa < 8:193172/77‑1 (MQ=255) agTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTtct < 3:193373/138‑1 (MQ=255) agTTTGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGACCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTtct < 8:140028/138‑1 (MQ=255) tttGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTtctgt < 7:423483/139‑1 (MQ=255) tttGTCTCATCAATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTtctgt < 3:438543/139‑1 (MQ=255) catcaATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGAt > 7:332079/1‑118 (MQ=255) catcaATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGAt < 8:332079/118‑1 (MQ=255) caATGATTCACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGctttaca > 5:256204/1‑133 (MQ=255) cACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGCTGCGATTTGTtctgt < 3:7388/121‑1 (MQ=255) cACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTtctgt > 4:7388/1‑121 (MQ=255) cACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGCTTTACAGATGttt > 2:91311/1‑138 (MQ=255) cACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGCTTTACAGATGttt > 3:378353/1‑138 (MQ=255) cACCGATAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGCTTTACAGATGttt > 3:226584/1‑138 (MQ=255) ccgaTAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGCTTTACAGATGTTTCaa < 1:210275/136‑1 (MQ=255) ccgaTAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGCTTTACAGATGTTTCaa < 3:221985/136‑1 (MQ=255) ccgaTAAGTACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGTTCTGTCTGCTTTACAGATGTTTCaa < 7:421682/136‑1 (MQ=255) aTAAGGACAGCTCGCGCCCCATGTTCATTGACAAATGTTAAATGTTCTAAAGAAGCGATTCCGCTTTCGCTGACAAGCAAGGATTCTTTCGGAACGAGAGATGCGATTTGGTCTGTCTGCTTTACAGATGTTTCaaacg < 7:213944/139‑3 (MQ=255) | TGCTGCAAGCTGCAAATCCTGCAGTGACCGTATGCCGCAATATTTTAATGCCGGCTTCTTCACATCCTCACTCCCCAAACAAAGCATGGATTGCTTTTTGCTGTGATGTTTGTCTCATCAATGATTCACCAATAAGCACAGCTCGTGCTCCATGTTCTTTGACAAATGTTAAATGTTCTAAAGAACCGATTCCGCTTTCGCTGACAAGCAGTGATTCTTTCGGAGCAAGAGATGCGATTTGTTCTGTCTGCATGATAGAGGTTTCAAAAG > CP006881/2191934‑2192203 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |