| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,193,622 | T→C | G47G (GGA→GGG) | U712_10990 ← | Anthranilate phosphoribosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,193,622 | 0 | T | C | 80.0% | 20.7 / 1.5 | 10 | coding (141/1017 nt) | U712_10990 | Anthranilate phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (3/5); minor base . (1/1); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGATATTAAAAGTAGAAATACCGTCTCCTCCGGTTCCGCATGTATCAACGACATCAGGAAGTCCATCGACTGTAAGAGCGCGTGCCCGCATCGCCTTTACAAAGCCCGTTAGCTCTTCTGGCGTCTCTCCCCGATGAGCAAGAATAGACAATATACCGCCCATTTCAGAAGGTGCCATTTCCGCTGTTATCATCATATTCATCAGCGCTTCTGCCTCATCGGCAGTAAGTGTTTTTCCGTCAACGCACAATTGTAGAAATT > CP006881/2193494‑2193755 | gagaTATTAAAAGTGGAAATACCGTCTCCCCCTGTTCCGCATGTATCAACAATATCAGGACGTCCATCGACTGTAAGAGCGTGTGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTC‑CCCCGATGAg < 3:350769/138‑1 (MQ=255) tAAAAGTGGAAATACCGTCTCCCCCTGTTCCGCATGTATCAACAATATCATGAAGAACATCGACTGTAAGAGCGTGTTCCCGCATTGCCGTCACAAAACCCGCACGCTCTTCTGGAGTATC‑CCCCGATGAGCAAGAAtt > 4:350769/1‑138 (MQ=255) aaTACCGGCTCCCCCTGTTCCGCATGTATCAACAATATCAGGAAGGCCATCGACTGTAAGAGCGTGTGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCGATGAGCAAGAATTGACAatatc < 3:258018/139‑2 (MQ=255) cATGTATCAACAATATCAGGAAGTCCATCGACTGTAAGAGCGTGTGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCGATGAg > 1:89254/1‑100 (MQ=255) cATGTATCAACAATATCAGGAAGTCCATCGACTGTAAGAGCGTGTGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCGATGAg < 2:89254/100‑1 (MQ=255) cATCGACTGTAAGAGCGTGTGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCGATGAGCAAGAAttg > 5:37940/1‑82 (MQ=255) tGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCg > 7:267712/1‑51 (MQ=255) tGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCg < 8:267712/51‑1 (MQ=255) tGCCCGCATTGCCTTCACAAAACCCGCAAGCTCTTCTGGCGTCTCCCCCCGATGAGCAAGAATTGACAATATCCCCCCCATTTCAGAAGGAGTCATTTCCGCTGCCATCATCATATTCATCAGCGTTTCAGCCTCacc < 7:417997/138‑3 (MQ=255) gTCTCCCCCCGATGAGCAAGAATTGACAATATCCCCCCCATTTCAGAAGGAGTCATTTCCGCTGCCATCATCATATTCATCAGCGTTTCAGCCTCACCGGCAGTAAGGGTTTTTCCGTCAACGCACAATTGTAGAAAtc < 5:89383/139‑2 (MQ=255) | GAGATATTAAAAGTAGAAATACCGTCTCCTCCGGTTCCGCATGTATCAACGACATCAGGAAGTCCATCGACTGTAAGAGCGCGTGCCCGCATCGCCTTTACAAAGCCCGTTAGCTCTTCTGGCGTCTCTCCCCGATGAGCAAGAATAGACAATATACCGCCCATTTCAGAAGGTGCCATTTCCGCTGTTATCATCATATTCATCAGCGCTTCTGCCTCATCGGCAGTAAGTGTTTTTCCGTCAACGCACAATTGTAGAAATT > CP006881/2193494‑2193755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |