Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006881 | 2,194,631 | A→G | Y217Y (TAT→TAC) | U712_10995 ← | Anthranilate synthase component 1 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 2,194,631 | 0 | A | G | 98.1% | 163.7 / ‑4.5 | 53 | Y217Y (TAT→TAC) | U712_10995 | Anthranilate synthase component 1 |
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (29/23); total (29/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.53e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
ATTTTTGTGACAGAACGCCTTGGAAGATATCGCCCGCTTTTATATATTCTTTTATTTTTTCTACATCAGCCATAAAGGCTGGTTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTATATGAATCAGCAGAAAGAAACAGTTCTTTTATGTTTTTTTGATCCATCATTTTTTCTATGAGATCTTGAAGCTCTTGATGATTTTGATGAAATACATCGATTTTTTC‑GTTTTCTGTTTCCTGTCCATTGAGCCTT > CP006881/2194507‑2194766 | aTTTTTGTGATAAAACACCCTGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCaga < 5:184858/139‑1 (MQ=255) aTTTTTGTGATAAAACACCCTGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCaga < 2:430501/139‑1 (MQ=255) aTTTTTGTGATAAAACACCCTGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCaga < 3:184063/139‑1 (MQ=255) tttttGTGATAAAACACCCTGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCagaa < 6:334050/139‑1 (MQ=255) cctGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTAt > 4:74546/3‑139 (MQ=255) cctGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTAt > 4:46234/3‑139 (MQ=255) tGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCTGCAGAAAGAAAGAGCTCTTTTATGt > 2:107268/1‑139 (MQ=255) tGGAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGt > 7:179542/1‑139 (MQ=255) gAAGATATCGCCTGCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTTTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGt < 3:6844/137‑1 (MQ=255) atCGCCTGGTTTTATATAGCTTTTGATGTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGGAACAGCTCTTTTTTGGTttgttgg > 6:13803/1‑138 (MQ=255) cctgCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCca > 5:300157/4‑139 (MQ=255) cctgCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCca > 1:47849/4‑139 (MQ=255) cctgCTTTTATATAGCTTTTGATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCca > 7:295377/4‑139 (MQ=255) gcttttgATTTTTTCTACATCAGCGATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAAt > 1:179382/4‑138 (MQ=255) gcttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAAt > 2:318354/4‑138 (MQ=255) gcttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATg < 7:201918/136‑1 (MQ=255) gcttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATg < 2:238672/136‑1 (MQ=255) gcttttgATTTTTTCTACATCAGCCATAAAAGACTATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATg < 7:369205/136‑1 (MQ=255) cttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAAt > 3:427611/3‑137 (MQ=255) cttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAAt > 4:248635/3‑137 (MQ=255) cttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATga > 1:248665/3‑139 (MQ=255) cttttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATga < 5:404018/137‑1 (MQ=255) tttgATTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAAt > 3:392735/1‑135 (MQ=255) ttgaTTTTTTCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGAt > 3:445617/4‑139 (MQ=255) ttttCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGa < 8:179542/138‑1 (MQ=255) ttttCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGa < 5:431863/138‑1 (MQ=255) tttCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCTATGAGATTTTGAAg > 1:327908/1‑139 (MQ=255) tttCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAg > 2:150761/1‑139 (MQ=255) ttCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAg < 7:109156/138‑1 (MQ=255) ttCTACATCAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGc > 8:236612/1‑139 (MQ=255) cAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTcaa > 5:117271/1‑115 (MQ=255) cAGCCATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTcaa < 6:117271/117‑3 (MQ=255) cATAAAAGCCGATTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAACAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGAttt < 7:222843/139‑1 (MQ=255) ccgatttttCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGgaa < 4:392735/135‑1 (MQ=255) ccgatttttCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGgaa < 1:354099/135‑1 (MQ=255) tACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGTTTTTGAAGATACAGATGATTTTGATGGAATACATCCATTTTTTCTGttttt > 4:267897/1‑138 (MQ=255) aCTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTg > 4:287536/1‑139 (MQ=255) cTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 8:295377/139‑1 (MQ=255) cTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 3:65584/139‑1 (MQ=255) cTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 2:47849/139‑1 (MQ=255) tGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGtt > 5:119233/1‑139 (MQ=255) tGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGtt > 1:434897/1‑139 (MQ=255) tctcAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGttt < 4:354680/138‑1 (MQ=255) tctcAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGttt > 3:303000/1‑138 (MQ=255) aaaGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCt < 3:287536/137‑1 (MQ=255) aaGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTtga > 6:46151/1‑102 (MQ=255) aaGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTtga < 5:46151/102‑1 (MQ=255) gggTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCATCTCCagt > 2:245082/1‑136 (MQ=255) ggTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCagt < 4:81931/137‑3 (MQ=255) ggTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCagt > 8:317002/1‑135 (MQ=255) ggTGTCTTATATGAATCAGCAGAAAGAAACAGTTCTTTTATGTTTTTTTGATCCATCATTTTTTCTATGAGATCTTGAAGCTCTTGATGATTTTGATGAAATACATCGATTTTTTC‑GTTTTCTGTTTCCTGTCCAtt < 6:307581/137‑1 (MQ=255) gtCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGcc > 4:158631/1‑139 (MQ=255) cTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCtt > 1:105018/1‑139 (MQ=255) | ATTTTTGTGACAGAACGCCTTGGAAGATATCGCCCGCTTTTATATATTCTTTTATTTTTTCTACATCAGCCATAAAGGCTGGTTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTATATGAATCAGCAGAAAGAAACAGTTCTTTTATGTTTTTTTGATCCATCATTTTTTCTATGAGATCTTGAAGCTCTTGATGATTTTGATGAAATACATCGATTTTTTC‑GTTTTCTGTTTCCTGTCCATTGAGCCTT > CP006881/2194507‑2194766 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |