Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006881 | 2,194,721 | A→G | F187F (TTT→TTC) | U712_10995 ← | Anthranilate synthase component 1 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 2,194,721 | 0 | A | G | 98.4% | 189.6 / ‑4.7 | 61 | F187F (TTT→TTC) | U712_10995 | Anthranilate synthase component 1 |
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (19/41); total (19/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01 |
CTGGTTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTATATGAATCAGCAGAAAGAAACAGTTCTTTTATGTTTTTTTGATCCATCATTTTTTCTATGAGATCTTGAAGCTCTTGATGATTTTGATGAAATACATCGATTTTTTC‑GTTTTCTGTTTCCTGTCCATTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTAGTTTCATGATCATATGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATTCC > CP006881/2194585‑2194852 | ccgatttttCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGgaa < 4:392735/135‑1 (MQ=255) ccgatttttCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGgaa < 1:354099/135‑1 (MQ=255) tACTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGTTTTTGAAGATACAGATGATTTTGATGGAATACATCCATTTTTTCTGttttt > 4:267897/1‑138 (MQ=255) aCTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTg > 4:287536/1‑139 (MQ=255) cTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 8:295377/139‑1 (MQ=255) cTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 3:65584/139‑1 (MQ=255) cTGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 2:47849/139‑1 (MQ=255) tGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGtt > 5:119233/1‑139 (MQ=255) tGTCTCAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGtt > 1:434897/1‑139 (MQ=255) tctcAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGttt < 4:354680/138‑1 (MQ=255) tctcAAAGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGttt > 3:303000/1‑138 (MQ=255) aaaGCTGGGTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCt < 3:287536/137‑1 (MQ=255) gggTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCATCTCCagt > 2:245082/1‑136 (MQ=255) ggTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCagt > 8:317002/1‑135 (MQ=255) ggTGTCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCagt < 4:81931/137‑3 (MQ=255) ggTGTCTTATATGAATCAGCAGAAAGAAACAGTTCTTTTATGTTTTTTTGATCCATCATTTTTTCTATGAGATCTTGAAGCTCTTGATGATTTTGATGAAATACATCGATTTTTTC‑GTTTTCTGTTTCCTGTCCAtt < 6:307581/137‑1 (MQ=255) gtCTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGcc > 4:158631/1‑139 (MQ=255) cTTGTATGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCtt > 1:105018/1‑139 (MQ=255) gtatGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCtt < 6:300157/135‑1 (MQ=255) gtatGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCtt < 2:111982/135‑1 (MQ=255) tatGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTT‑TGTTTCCTCTCCAGTGAGCCTTGCata < 3:46234/139‑1 (MQ=255) atGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCGTGCtta > 6:87675/1‑139 (MQ=255) tGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAGTACATACATTTTTTC‑GTTTTTTGTTTACTCTCCAGTGAGCCTTGCatat > 1:309692/1‑139 (MQ=255) tGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCata < 7:324871/138‑1 (MQ=255) tGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCata < 4:212807/138‑1 (MQ=255) tGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCata < 3:74546/138‑1 (MQ=255) tGAATCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTATCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCata < 4:164531/138‑1 (MQ=255) aTCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt < 3:128409/111‑1 (MQ=255) aTCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGt > 4:128409/1‑111 (MQ=255) aTCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTg > 3:285953/1‑138 (MQ=255) tcatcaGAAACAAACCTCTCTTTTATGTTTTTTTCGTCCATCATTTATTCAATGATATTTTGAAGCTACAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGa < 2:327908/139‑1 (MQ=255) tCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGa < 7:366384/139‑1 (MQ=255) tCAGCAGAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGa < 1:150761/139‑1 (MQ=255) gcagAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATa > 1:173846/1‑138 (MQ=255) cagAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATaaa < 2:248665/139‑1 (MQ=255) cagAAAGAAACAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATaaa > 3:448841/1‑139 (MQ=255) aaagaaaCAGCTCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTg > 5:382886/1‑139 (MQ=255) ctCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGtttttg > 5:301578/2‑138 (MQ=255) ctCTTTTATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGtttttg < 4:133300/138‑2 (MQ=255) ttATGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGttt > 3:54322/1‑138 (MQ=255) aTGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCa < 1:245082/138‑1 (MQ=255) aTGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCa < 7:314623/138‑1 (MQ=255) aTGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCa < 5:436299/138‑1 (MQ=255) aTGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCa < 3:277760/138‑1 (MQ=255) aTGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCa < 2:17997/138‑1 (MQ=255) aTGTTTTTTTGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTAGACGTTTTTGGTTTCa < 2:19554/138‑1 (MQ=255) ttGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATTTTGGATAAAGTGGACGTTTTTGGTTTCATGATCata < 1:14417/138‑1 (MQ=255) ttGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCata < 1:318354/138‑1 (MQ=255) ttGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCata < 4:303000/138‑1 (MQ=255) ttGGTCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCata < 2:434897/138‑1 (MQ=255) ggtCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCatacg < 4:60680/136‑3 (MQ=255) gtCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGc > 3:85370/2‑138 (MQ=255) tCCATCATTTTTTCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTACAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCaa < 3:267897/139‑1 (MQ=255) tttCAATGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTcc < 5:106504/138‑1 (MQ=255) tcaaTGAGATTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCgg < 7:236612/135‑1 (MQ=255) gaTTTTGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGcaaacaaa < 4:427611/139‑1 (MQ=255) attttGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGcaaacaaa < 7:317002/135‑1 (MQ=255) ttttGAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCaaacaaac < 3:429691/136‑1 (MQ=255) gAAGCTCCAGATGATTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCa < 2:105018/138‑1 (MQ=255) atgatTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTcc < 3:248635/139‑1 (MQ=255) atTTTGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCAt < 4:285953/138‑1 (MQ=255) ttGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCAtgtc < 3:158631/138‑4 (MQ=255) ttGATGGAATACATCCATTTTTTC‑GTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCAtgtc < 2:173846/138‑4 (MQ=255) | CTGGTTTTTCATAATTAGAAGATACTGTCTCAAAGCTGGGTGTCTTATATGAATCAGCAGAAAGAAACAGTTCTTTTATGTTTTTTTGATCCATCATTTTTTCTATGAGATCTTGAAGCTCTTGATGATTTTGATGAAATACATCGATTTTTTC‑GTTTTCTGTTTCCTGTCCATTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTAGTTTCATGATCATATGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATTCC > CP006881/2194585‑2194852 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |