| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,194,864 | A→T | S140T (TCA→ACC) | U712_10995 ← | Anthranilate synthase component 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,194,864 | 0 | A | T | 98.4% | 187.9 / NA | 61 | S140T (TCA→ACC) | U712_10995 | Anthranilate synthase component 1 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (34/26); minor base G (1/0); total (35/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTTTTCGTTTTCTGTTTCCTGTCCATTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTAGTTTCATGATCATATGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATTCCTGTTTCTTTTGAATGCGGAGGAACAGAAGGCTCAATCAGCGGGATCATATCGTAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCTAGCTCTGGCGTTTTGATTTTGTACGTGGTATTCATCCAATTCAGAAC > CP006881/2194732‑2194993 | ttttttCGTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTGATGAACATACGCAATTTAATTCCGGCAAACAAAAAACAAACACTTTTCCATGTGTGTTTATTTTGGAttgg > 4:251688/1‑135 (MQ=255)ttttttCGTTTTTTGTTTCCTCTCCAGTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCg > 6:379057/1‑138 (MQ=255) tcttttGTATCCTCTCCAGTGAGCCTTTCATATTGGATAAAGTGGCCGAGTTTGGATTCATGATCATACCCAATTAATGTCCGGCAAACAAACCGCAAACACTTATCCATCTCTGTTTCTTTGGTAAGCGAAGGAACAg < 5:13803/134‑1 (MQ=255) cagtGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAg < 2:179382/133‑1 (MQ=255) tGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGa < 3:251688/138‑1 (MQ=255) tGAGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGAt < 6:382886/139‑1 (MQ=255) tGAGCCTTGCATATTGGATAAAGTGGACGTGGTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACACCATACACTTTTCAATGTCTGTTTCTTGGGTATGCGAAGGATCACAACGCGAACTCAGCGGGAt > 5:129394/1‑139 (MQ=255) aGCCTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAAATAATGTCCGGCAAACAAACAGCTTACACTTTTCCATGTCTGTTTCTTTGGTTTGCGAAGGAACAGAAGGCTCAATCAGCGGTATc < 5:31447/138‑1 (MQ=255) ccTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAg < 6:117076/116‑1 (MQ=255) ccTTGCATATTGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAg > 5:117076/1‑116 (MQ=255) gCATATTGGATAAAGTGGACGTTTTTGGTTGCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATca < 1:107268/138‑2 (MQ=255) ttGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCtt < 5:379057/139‑1 (MQ=255) tGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGa > 6:18838/1‑124 (MQ=255) tGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGa < 5:18838/124‑1 (MQ=255) tGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGGCGGTTTCTTTGGTATGCGTAGGAACAGAAGGCTCATTCAGCGGGATCATATCATAGGtt > 1:206305/1‑138 (MQ=255) tGGATAAAGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTACATGTGTGTTTCTTTGGTATGCGAATGAACAGAAGGCTCAATCAGCGGGATAATATCATAGAtt > 1:398069/1‑138 (MQ=255) aGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTAccc > 5:400834/1‑139 (MQ=255) aGTGGACGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTAccc > 3:99233/1‑139 (MQ=255) aCGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCTGCGGGATCATATCATAGCTTAAGTACCCGACAg > 1:402536/1‑139 (MQ=255) aCGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAg > 8:442972/1‑107 (MQ=255) aCGTTTTTGGTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAg < 7:442972/107‑1 (MQ=255) aCGTTTTTGGGTTCATGCTCATACGCAATTAATGTGCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCTGACAg > 4:431393/1‑139 (MQ=255) tttGGTTTCAAGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCCTGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTAACCGACAGCTccg > 3:317114/1‑139 (MQ=255) tggTTTCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTccgc < 6:119233/136‑1 (MQ=255) tttCATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGa > 4:168340/1‑138 (MQ=255) cATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGAt > 8:101488/1‑100 (MQ=255) cATGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGAt < 7:101488/100‑1 (MQ=255) aTGATCATACGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACaa > 7:206081/1‑137 (MQ=255) cAATTAATGTCGGGAAAAAAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAg < 4:255158/139‑1 (MQ=255) ttAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATca > 6:402057/1‑91 (MQ=255) ttAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATca < 5:402057/92‑2 (MQ=255) ttAATGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGct > 6:279406/1‑138 (MQ=255) aaTGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGctca < 6:301578/138‑2 (MQ=255) aTGTCCGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGctcag < 4:85370/138‑3 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCTAAGGAACAGAAGGCTCAATCAGCGGGAGCATATCATAGCTTAAGTACACGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGttt > 2:323907/1‑139 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGc < 1:174469/72‑1 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGc > 2:174469/1‑72 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCCAGCTCAGGTGttt > 6:244051/1‑139 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGttt > 3:255158/1‑139 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGttt > 7:315365/1‑139 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGttt > 5:16647/1‑139 (MQ=255) cGGCAAACAAACAGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGttt > 3:57567/1‑139 (MQ=255) aacaGCATACACTTTTCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGt < 8:206081/139‑1 (MQ=255) gCATACACTTATCCTTGTCTGTTGCTTTGGTATGCGAATGAACAGAAGGCTCAATCAGCGGTATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGt < 2:309692/139‑1 (MQ=255) tttCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGCCAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCAt > 1:262393/1‑139 (MQ=255) tttCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCAt > 7:102235/1‑139 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAATGAACAGATGGCTAAATCAGCGGGTTCATATCATAGCTTATGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATc < 4:336903/138‑1 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAg < 7:202681/47‑1 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAg > 8:202681/1‑47 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATc > 1:340110/1‑138 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATc > 5:28803/1‑138 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATc > 4:283269/1‑138 (MQ=255) tCCATGTCTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGGGTTTTGATTTTGTATGTGGTATTCATc < 4:386367/138‑1 (MQ=255) catgtcTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATCCag > 1:193346/6‑138 (MQ=255) tgtcTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATCCAGtt > 5:363158/4‑139 (MQ=255) gtcTGTTTCTTTGGTATGCGAACGAACAGAAGGCTCAATCAGCGGGATCATATCATATCTTAACTACCCCACAGCTCCGCCGACAAAAGGATTGCCAAGCTCAGGTGTTTTGATTTAGTATGTGGTATTATTCCAGtt > 3:336903/3‑138 (MQ=255) cTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGcc < 7:34641/94‑1 (MQ=255) cTGTTTCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGcc > 8:34641/1‑94 (MQ=255) tttCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATCCAGTTCAgca < 5:87675/138‑3 (MQ=255) tttCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATCCAGTTCAGCAc < 4:448841/139‑1 (MQ=255) tttCTTTGGTATGCGAAGGAACAGAAGGCTCAATCAGCGGGATCATATCATAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCAAGCTCAGGTGTTTTGATTTTGTATGTGGTATTCATCCAGTTCAGCAc < 4:99233/139‑1 (MQ=255) | TTTTTTCGTTTTCTGTTTCCTGTCCATTGAGCCTTGCATATTGGATAAAGTGGACGTTTTTAGTTTCATGATCATATGCAATTAATGTCCGGCAAACAAACAGCATACACTTTTCCATTCCTGTTTCTTTTGAATGCGGAGGAACAGAAGGCTCAATCAGCGGGATCATATCGTAGCTTAAGTACCCGACAGCTCCGCCGACAAAAGGAATGCCTAGCTCTGGCGTTTTGATTTTGTACGTGGTATTCATCCAATTCAGAAC > CP006881/2194732‑2194993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |