Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,195,489	C→T	intergenic (‑208/+8)	U712_10995 ← / ← U712_11000	Anthranilate synthase component 1/Chorismate mutase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,195,489	0	C	T	100.0%	301.1 / NA	95	intergenic (‑208/+8)	U712_10995/U712_11000	Anthranilate synthase component 1/Chorismate mutase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/51);  total (44/51)

CCAAAAGAAAGGCTTCTTTTGGGTAGAATAAACATACATGTCTCAGCTCAACTACACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTC‑AATCGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCCTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGTCTTAATACAACGGCTTTTTCTAAATATACATGCCTGATCCGTTCCTGAGGAACATCTGTCTGGACGGTCATCATGACTCTGATGCACTTTT  >  CP006881/2195354‑2195624                                                                                                                                         |                                                                                                                                        ccAAAAGAAAGACTTCTTTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTAt                                                                                                                                      <  4:415678/139‑1 (MQ=255)   aaaaGAAAGACTTCTTTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCg                                                                                                                                    <  3:321244/139‑1 (MQ=255)   aaaaGAAAGACTTCTTTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCg                                                                                                                                    <  3:213210/139‑1 (MQ=255)   aaaaGAAAGACTTCTTTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCg                                                                                                                                    <  7:9630/139‑1 (MQ=255)     aagaaagaCTTCTTTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTa                                                                                                                                  >  6:151440/1‑139 (MQ=255)        aaagACTTCTTTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTa                                                                                                                               <  6:369960/139‑1 (MQ=255)           gacttcttTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACaa                                                                                                                            >  6:33664/3‑139 (MQ=255)           gacttcttTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACaa                                                                                                                            <  2:40013/137‑1 (MQ=255)           gacttcttTTGGGTAGAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTATAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTATAAGATGTTCTTATCGTATTACa                                                                                                                             >  6:27681/3‑138 (MQ=255)                          gAATAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGt                                                                                                             <  3:425600/139‑1 (MQ=255)                           aaTAAACATA‑ATGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGt                                                                                                             >  8:216423/1‑138 (MQ=255)                                 acataatGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGa                                                                                                       <  2:432160/134‑1 (MQ=255)                                   ataatGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATAGTATTACAATTCAGTATTTTTTGTCAATGAt                                                                                                      >  6:346066/4‑138 (MQ=255)                                      atGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAAt                                                                                                  <  7:216423/139‑1 (MQ=255)                                      atGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAAt                                                                                                  >  2:317271/1‑139 (MQ=255)                                      atGTCTCAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAAt                                                                                                  >  3:237381/1‑139 (MQ=255)                                           tcAGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCgggc                                                                                             >  3:12029/1‑138 (MQ=255)                                             aGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCgggcc                                                                                            >  2:365273/1‑136 (MQ=255)                                             aGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCgggc                                                                                             <  5:151440/137‑2 (MQ=255)                                             aGCTCAACTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCgggc                                                                                             <  2:149861/137‑2 (MQ=255)                                                  aaCTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCAATCTAATTGCTTTATACACACTCATGTGTATTTCTAAGATGTTCTTATAGTATTACAATTCAGTATTTTTTGTCAATTATAAATCGGGACTCAATa                                                                                      >  2:304816/1‑139 (MQ=255)                                                         cTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGAcaac                                                                               <  5:93944/139‑4 (MQ=255)                                                              tctcTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCATTATTTTTTGTAAATGATAAATCGGGCCTCAATACGACAACtttt                                                                           <  2:328500/138‑1 (MQ=255)                                                              tctcTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACtttt                                                                           >  8:331903/1‑138 (MQ=255)                                                               ctctGCTTCCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                          <  3:76181/138‑1 (MQ=255)                                                               ctctGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATACAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                          <  6:11845/138‑1 (MQ=255)                                                                 ctGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                        >  3:77178/1‑138 (MQ=255)                                                                  tGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                        <  3:138686/137‑1 (MQ=255)                                                                  tGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                        <  4:305629/137‑1 (MQ=255)                                                                       cccTATTCTCTATCTCAACTCATTCTAATTGCTTTATACAGACTCTTGTGTTTTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGTCAACTTTTTCTAAAtata                                                                 <  7:138975/139‑1 (MQ=255)                                                                       cccTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAata                                                                   <  1:114013/137‑1 (MQ=255)                                                                       cccTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAAtata                                                                 <  3:2379/139‑1 (MQ=255)                                                                       cccTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAAtata                                                                 <  7:82789/139‑1 (MQ=255)                                                                          tATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACAt                                                              >  4:186780/1‑139 (MQ=255)                                                                            ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                          <  5:343776/125‑1 (MQ=255)                                                                            ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                          >  6:343776/1‑125 (MQ=255)                                                                            ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgt                                                            <  6:179258/139‑2 (MQ=255)                                                                            ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgt                                                            >  4:421109/1‑138 (MQ=255)                                                                            ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATg                                                             >  8:86834/1‑138 (MQ=255)                                                                                 tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGt                                                                                                             <  1:270543/85‑1 (MQ=255)                                                                                 tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGt                                                                                                             >  2:270543/1‑85 (MQ=255)                                                                                 tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGa                                                        >  4:189118/1‑138 (MQ=255)                                                                                 tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGAt                                                       <  4:77178/139‑1 (MQ=255)                                                                                  aactcaactcATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAATCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATc                                                      <  6:78315/139‑1 (MQ=255)                                                                                   actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGAt                                                       <  3:421109/137‑1 (MQ=255)                                                                                   actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATct                                                     <  5:309283/139‑2 (MQ=255)                                                                                   actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACAAGTCTGAt                                                       <  4:237381/137‑1 (MQ=255)                                                                                    ctcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATct                                                     >  4:325250/1‑137 (MQ=255)                                                                                         ctcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCg                                                                                                >  1:289381/1‑90 (MQ=255)                                                                                         ctcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCg                                                                                                <  2:289381/90‑1 (MQ=255)                                                                                         ctcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCt                                               >  3:359204/1‑139 (MQ=255)                                                                                             ttctaaTTGCTTTTTACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAgg                                           <  5:333366/135‑1 (MQ=255)                                                                                             ttctaaTTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAgg                                           <  1:365273/135‑1 (MQ=255)                                                                                                  attgCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                      <  3:440788/136‑1 (MQ=255)                                                                                                        ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAtctgtct                                >  7:277761/1‑139 (MQ=255)                                                                                                        ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                      >  3:87489/1‑133 (MQ=255)                                                                                                        ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                      <  4:87489/133‑1 (MQ=255)                                                                                                           taCACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                             <  7:331903/139‑1 (MQ=255)                                                                                                               cacTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                         <  1:317271/139‑1 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACTACAACTTTTTCTAAATATACATTTATGATCTGATCCTGAGGGACATCTGTCTGGACCGt                         >  3:273514/1‑138 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTggcccgt                         >  4:104516/1‑133 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                             <  5:425605/134‑1 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                             >  6:425605/1‑134 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGtc                        >  6:6208/1‑139 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                         >  8:74098/1‑138 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                         >  7:175973/1‑138 (MQ=255)                                                                                                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                         >  2:145387/1‑138 (MQ=255)                                                                                                                    ttGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGtcat                      <  7:74098/137‑1 (MQ=255)                                                                                                                     tgtgTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                   >  1:361199/1‑139 (MQ=255)                                                                                                                      gtgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                   <  8:277761/138‑1 (MQ=255)                                                                                                                      gtgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                   <  7:86834/138‑1 (MQ=255)                                                                                                                       tgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGa                 <  5:33664/139‑1 (MQ=255)                                                                                                                       tgtATTTCTAAGCTGTTCTTATAGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGAACGTCATCATGa                 <  5:27681/139‑1 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgtc                                                           <  4:279549/92‑3 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgtc                                                           >  3:279549/1‑90 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACa                                       >  3:426464/1‑112 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACa                                       <  4:426464/112‑1 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGAgtct             >  4:110466/1‑138 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActctt            >  6:411029/1‑138 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct             >  4:428782/1‑138 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct             >  8:188048/1‑138 (MQ=255)                                                                                                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct             >  1:358976/1‑138 (MQ=255)                                                                                                                              cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                        <  1:356800/77‑1 (MQ=255)                                                                                                                              cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                        >  2:356800/1‑77 (MQ=255)                                                                                                                              cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTAt          >  3:177380/1‑139 (MQ=255)                                                                                                                              cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTAt          >  4:142533/1‑139 (MQ=255)                                                                                                                                 atcTGTTCTTTTCGTATAACCATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCa       <  6:297027/137‑1 (MQ=255)                                                                                                                                 aGCTGTTCTTATCGTATTTCAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg         <  3:189118/137‑1 (MQ=255)                                                                                                                                 aGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg         <  5:4062/137‑1 (MQ=255)                                                                                                                                 aGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGGCTGGACCGTCATCATGACTCTTATGCa       <  7:76004/139‑1 (MQ=255)                                                                                                                                 aGCTGTTCTTATCGTATTACAATTCACTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg         <  3:6226/137‑1 (MQ=255)                                                                                                                                  gCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCAc      <  5:411029/139‑1 (MQ=255)                                                                                                                                      ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt  >  5:165317/1‑139 (MQ=255)                                                                                                                                      ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt  >  3:196212/1‑139 (MQ=255)                                                                                                                                      ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACGTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt  >  1:293798/1‑139 (MQ=255)                                                                                                                                         |                                                                                                                                        CCAAAAGAAAGGCTTCTTTTGGGTAGAATAAACATACATGTCTCAGCTCAACTACACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTC‑AATCGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCCTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGTCTTAATACAACGGCTTTTTCTAAATATACATGCCTGATCCGTTCCTGAGGAACATCTGTCTGGACGGTCATCATGACTCTGATGCACTTTT  >  CP006881/2195354‑2195624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑