Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,195,536 T→C L115L (TTA→TTG)  U712_11000 ← Chorismate mutase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,195,5360TC100.0% 344.2 / NA 105L115L (TTA→TTG) U712_11000Chorismate mutase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (41/64);  total (41/64)

Only 100 of 105 total aligned reads displayed.

AACTACACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTC‑AATCGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCCTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGTCTTAATACAACGGCTTTTTCTAAATATACATGCCTGATCCGTTCCTGAGGAACATCTGTCTGGACGGTCATCATGACTCTGATGCACTTTTTCAGACCGCCGGTTACGTCCATTTCCTGCATACAGGTTACCG  >  CP006881/2195403‑2195666
                                                                                                                                      |                                                                                                                                  
aaCTAAACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCAATCTAATTGCTTTATACACACTCATGTGTATTTCTAAGATGTTCTTATAGTATTACAATTCAGTATTTTTTGTCAATTATAAATCGGGACTCAATa                                                                                                                                >  2:304816/1‑139 (MQ=255)
       cTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGAcaac                                                                                                                         <  5:93944/139‑4 (MQ=255)
            tctcTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCATTATTTTTTGTAAATGATAAATCGGGCCTCAATACGACAACtttt                                                                                                                     <  2:328500/138‑1 (MQ=255)
            tctcTGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACtttt                                                                                                                     >  8:331903/1‑138 (MQ=255)
             ctctGCTTCCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                                                                    <  3:76181/138‑1 (MQ=255)
             ctctGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATACAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                                                                    <  6:11845/138‑1 (MQ=255)
               ctGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                                                                  >  3:77178/1‑138 (MQ=255)
                tGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                                                                  <  3:138686/137‑1 (MQ=255)
                tGCTACCCTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                                                                  <  4:305629/137‑1 (MQ=255)
                     cccTATTCTCTATCTCAACTCATTCTAATTGCTTTATACAGACTCTTGTGTTTTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGTCAACTTTTTCTAAAtata                                                                                                           <  7:138975/139‑1 (MQ=255)
                     cccTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAata                                                                                                             <  1:114013/137‑1 (MQ=255)
                     cccTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAAtata                                                                                                           <  3:2379/139‑1 (MQ=255)
                     cccTATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAAtata                                                                                                           <  7:82789/139‑1 (MQ=255)
                        tATTCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACAt                                                                                                        >  4:186780/1‑139 (MQ=255)
                          ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                                                                    <  5:343776/125‑1 (MQ=255)
                          ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACttttt                                                                                                                    >  6:343776/1‑125 (MQ=255)
                          ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgt                                                                                                      >  4:421109/1‑138 (MQ=255)
                          ttCTCTAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgt                                                                                                      <  6:179258/139‑2 (MQ=255)
                               tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGa                                                                                                  >  4:189118/1‑138 (MQ=255)
                               tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGAt                                                                                                 <  4:77178/139‑1 (MQ=255)
                                 actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGAt                                                                                                 <  3:421109/137‑1 (MQ=255)
                                 actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATct                                                                                               <  5:309283/139‑2 (MQ=255)
                                 actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACAAGTCTGAt                                                                                                 <  4:237381/137‑1 (MQ=255)
                                  ctcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATct                                                                                               >  4:325250/1‑137 (MQ=255)
                                       ctcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCt                                                                                         >  3:359204/1‑139 (MQ=255)
                                           ttctaaTTGCTTTTTACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAgg                                                                                     <  5:333366/135‑1 (MQ=255)
                                           ttctaaTTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAgg                                                                                     <  1:365273/135‑1 (MQ=255)
                                                attgCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                <  3:440788/136‑1 (MQ=255)
                                                      ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAtctgtct                                                                          >  7:277761/1‑139 (MQ=255)
                                                      ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                <  4:87489/133‑1 (MQ=255)
                                                      ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                >  3:87489/1‑133 (MQ=255)
                                                         taCACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                                                                       <  7:331903/139‑1 (MQ=255)
                                                             cacTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                   <  1:317271/139‑1 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACTACAACTTTTTCTAAATATACATTTATGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                   >  3:273514/1‑138 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTggcccgt                                                                   >  4:104516/1‑133 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                                                                       >  6:425605/1‑134 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                                                                       <  5:425605/134‑1 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGtc                                                                  >  6:6208/1‑139 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                   >  7:175973/1‑138 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                   >  8:74098/1‑138 (MQ=255)
                                                              acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                   >  2:145387/1‑138 (MQ=255)
                                                                  ttGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGtcat                                                                <  7:74098/137‑1 (MQ=255)
                                                                   tgtgTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                                                             >  1:361199/1‑139 (MQ=255)
                                                                    gtgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                                                             <  7:86834/138‑1 (MQ=255)
                                                                    gtgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                                                             <  8:277761/138‑1 (MQ=255)
                                                                     tgtATTTCTAAGCTGTTCTTATAGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGAACGTCATCATGa                                                           <  5:27681/139‑1 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgtc                                                                                                     >  3:279549/1‑90 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATgtc                                                                                                     <  4:279549/92‑3 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACa                                                                                 <  4:426464/112‑1 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACa                                                                                 >  3:426464/1‑112 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGAgtct                                                       >  4:110466/1‑138 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActctt                                                      >  6:411029/1‑138 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct                                                       >  1:358976/1‑138 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct                                                       >  4:428782/1‑138 (MQ=255)
                                                                          ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct                                                       >  8:188048/1‑138 (MQ=255)
                                                                            cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                                                                  >  2:356800/1‑77 (MQ=255)
                                                                            cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCt                                                                                                                  <  1:356800/77‑1 (MQ=255)
                                                                               atcTGTTCTTTTCGTATAACCATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCa                                                 <  6:297027/137‑1 (MQ=255)
                                                                               aGCTGTTCTTATCGTATTTCAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg                                                   <  3:189118/137‑1 (MQ=255)
                                                                               aGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg                                                   <  5:4062/137‑1 (MQ=255)
                                                                               aGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGGCTGGACCGTCATCATGACTCTTATGCa                                                 <  7:76004/139‑1 (MQ=255)
                                                                               aGCTGTTCTTATCGTATTACAATTCACTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg                                                   <  3:6226/137‑1 (MQ=255)
                                                                                gCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCAc                                                <  5:411029/139‑1 (MQ=255)
                                                                                    ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt                                            >  3:196212/1‑139 (MQ=255)
                                                                                    ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt                                            >  5:165317/1‑139 (MQ=255)
                                                                                    ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACGTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt                                            >  1:293798/1‑139 (MQ=255)
                                                                                          tCGTATTACTATTAAGTATTTTTTGTCAATGATAAATCGGGCCTCTATACGACTACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAc                                      <  4:273514/139‑1 (MQ=255)
                                                                                             tATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAccgc                                   <  7:188048/139‑1 (MQ=255)
                                                                                              aTTACAATTCAGTATTTTTTGTCAATGATAAATCGTGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCATGAGGGCCATCTGTCTGTACCGTCATCATGACTCTTATGCACTTTTTAAGAcagag                                  >  7:175356/1‑135 (MQ=255)
                                                                                              aTTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAccgcc                                  >  5:429594/1‑139 (MQ=255)
                                                                                              aTTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAccgcc                                  >  4:293422/1‑139 (MQ=255)
                                                                                                   aaTTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTa                             <  4:196212/139‑1 (MQ=255)
                                                                                                   aaTTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTa                             <  3:186780/139‑1 (MQ=255)
                                                                                                   aaTTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTa                             <  4:177380/139‑1 (MQ=255)
                                                                                                     ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                >  2:9654/1‑86 (MQ=255)
                                                                                                     ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                <  1:9654/86‑1 (MQ=255)
                                                                                                     ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACg                           >  8:425989/1‑139 (MQ=255)
                                                                                                     ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACg                           <  5:84797/139‑1 (MQ=255)
                                                                                                       cAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGa                                                           <  6:3654/105‑1 (MQ=255)
                                                                                                       cAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGa                                                           >  5:3654/1‑105 (MQ=255)
                                                                                                          tATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCAt                      >  3:184988/1‑139 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  5:346066/138‑1 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  6:429594/138‑1 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  8:3864/138‑1 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  4:12029/138‑1 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  6:165317/138‑1 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  8:175973/138‑1 (MQ=255)
                                                                                                              ttttGTCAATGATAAATCGGGCCTCAATACGACAACATTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  2:293798/138‑1 (MQ=255)
                                                                                                              ttttGGCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                   <  1:145387/138‑1 (MQ=255)
                                                                                                                   tCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCa              <  7:7245/138‑1 (MQ=255)
                                                                                                                    cAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATa            >  3:131125/1‑139 (MQ=255)
                                                                                                                     aaTGATAAATCGTGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATa            <  6:64691/138‑1 (MQ=255)
                                                                                                                     aaTGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATAc           <  8:375637/139‑1 (MQ=255)
                                                                                                                       tGATATATCGGGCCTCAATACGACATCTTTATCTAAATATACCTGTCTGATCTGATCCAGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACat         <  8:175356/139‑2 (MQ=255)
                                                                                                                          tAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGt       <  2:358976/138‑1 (MQ=255)
                                                                                                                           aaaTCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGGCCGCCTGTTACGTCCATTTCCTGCATACATGTTa     <  2:361199/139‑1 (MQ=255)
                                                                                                                            aaTCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTa     <  3:325250/138‑1 (MQ=255)
                                                                                                                            aaTCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTAc    <  1:304816/139‑1 (MQ=255)
                                                                                                                              tCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg  <  4:359204/139‑1 (MQ=255)
                                                                                                                              tCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg  <  3:428782/139‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                  
AACTACACTCATTCTCTGCTACCCTATTCTCTAACTCAACTCATTC‑AATCGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCCTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGTCTTAATACAACGGCTTTTTCTAAATATACATGCCTGATCCGTTCCTGAGGAACATCTGTCTGGACGGTCATCATGACTCTGATGCACTTTTTCAGACCGCCGGTTACGTCCATTTCCTGCATACAGGTTACCG  >  CP006881/2195403‑2195666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑