Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,195,566	C→T	R105R (AGG→AGA)	U712_11000 ←	Chorismate mutase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,195,566	0	C	T	100.0%	306.2 / NA	97	R105R (AGG→AGA)	U712_11000	Chorismate mutase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (40/57);  total (40/57)

TAACTCAACTCATTC‑AATCGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCCTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGTCTTAATACAACGGCTTTTTCTAAATATACATGCCTGATCCGTTCCTGAGGAACATCTGTCTGGACGGTCATCATGACTCTGATGCACTTTTTCAGACCGCCGGTTACGTCCATTTCCTGCATACAGGTTACCGGCACATACTGCCATCCTGAAAGCTCACGGA  >  CP006881/2195434‑2195696                                                                                                                                      |                                                                                                                                   tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGa                                                                                                                                >  4:189118/1‑138 (MQ=255) tAACTCAACTCATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGAt                                                                                                                               <  4:77178/139‑1 (MQ=255)  aactcaactcATTCTAATTGCTTTATACACACTCTTGTGTATTTCTAATCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATc                                                                                                                              <  6:78315/139‑1 (MQ=255)   actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGAt                                                                                                                               <  3:421109/137‑1 (MQ=255)   actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATct                                                                                                                             <  5:309283/139‑2 (MQ=255)   actcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACAAGTCTGAt                                                                                                                               <  4:237381/137‑1 (MQ=255)    ctcaactcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATct                                                                                                                             >  4:325250/1‑137 (MQ=255)         ctcaTTCTAATTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCt                                                                                                                       >  3:359204/1‑139 (MQ=255)             ttctaaTTGCTTTTTACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAgg                                                                                                                   <  5:333366/135‑1 (MQ=255)             ttctaaTTGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAgg                                                                                                                   <  1:365273/135‑1 (MQ=255)                  attgCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                                              <  3:440788/136‑1 (MQ=255)                        ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAtctgtct                                                                                                        >  7:277761/1‑139 (MQ=255)                        ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                                              >  3:87489/1‑133 (MQ=255)                        ttATACACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                                              <  4:87489/133‑1 (MQ=255)                           taCACACTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                                                                                                     <  7:331903/139‑1 (MQ=255)                               cacTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 <  1:317271/139‑1 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACTACAACTTTTTCTAAATATACATTTATGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 >  3:273514/1‑138 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTggcccgt                                                                                                 >  4:104516/1‑133 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                                                                                                     >  6:425605/1‑134 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGa                                                                                                     <  5:425605/134‑1 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGtc                                                                                                >  6:6208/1‑139 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 >  8:74098/1‑138 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 >  7:175973/1‑138 (MQ=255)                                acTCTTGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 >  2:145387/1‑138 (MQ=255)                                    ttGTGTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGtcat                                                                                              <  7:74098/137‑1 (MQ=255)                                     tgtgTATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                                                                                           >  1:361199/1‑139 (MQ=255)                                      gtgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                                                                                           <  7:86834/138‑1 (MQ=255)                                      gtgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTcatcat                                                                                           <  8:277761/138‑1 (MQ=255)                                       tgtATTTCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGa                                                                                         <  5:33664/139‑1 (MQ=255)                                       tgtATTTCTAAGCTGTTCTTATAGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGAACGTCATCATGa                                                                                         <  5:27681/139‑1 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACa                                                                                                               >  3:426464/1‑112 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACa                                                                                                               <  4:426464/112‑1 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGAgtct                                                                                     >  4:110466/1‑138 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActctt                                                                                    >  6:411029/1‑138 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct                                                                                     >  8:188048/1‑138 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct                                                                                     >  4:428782/1‑138 (MQ=255)                                            ttCTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGActct                                                                                     >  1:358976/1‑138 (MQ=255)                                              cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTAt                                                                                  >  4:142533/1‑139 (MQ=255)                                              cTAAGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTAt                                                                                  >  3:177380/1‑139 (MQ=255)                                                 atcTGTTCTTTTCGTATAACCATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCa                                                                               <  6:297027/137‑1 (MQ=255)                                                 aGCTGTTCTTATCGTATTTCAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg                                                                                 <  3:189118/137‑1 (MQ=255)                                                 aGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg                                                                                 <  5:4062/137‑1 (MQ=255)                                                 aGCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGGCTGGACCGTCATCATGACTCTTATGCa                                                                               <  7:76004/139‑1 (MQ=255)                                                 aGCTGTTCTTATCGTATTACAATTCACTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATg                                                                                 <  3:6226/137‑1 (MQ=255)                                                  gCTGTTCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCAc                                                                              <  5:411029/139‑1 (MQ=255)                                                      ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt                                                                          >  5:165317/1‑139 (MQ=255)                                                      ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt                                                                          >  3:196212/1‑139 (MQ=255)                                                      ttCTTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACGTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACtttt                                                                          >  1:293798/1‑139 (MQ=255)                                                            tCGTATTACTATTAAGTATTTTTTGTCAATGATAAATCGGGCCTCTATACGACTACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAc                                                                    <  4:273514/139‑1 (MQ=255)                                                               tATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAccgc                                                                 <  7:188048/139‑1 (MQ=255)                                                                aTTACAATTCAGTATTTTTTGTCAATGATAAATCGTGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCATGAGGGCCATCTGTCTGTACCGTCATCATGACTCTTATGCACTTTTTAAGAcagag                                                                >  7:175356/1‑135 (MQ=255)                                                                aTTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAccgcc                                                                >  4:293422/1‑139 (MQ=255)                                                                aTTACAATTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGAccgcc                                                                >  5:429594/1‑139 (MQ=255)                                                                     aaTTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTa                                                           <  3:186780/139‑1 (MQ=255)                                                                     aaTTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTa                                                           <  4:177380/139‑1 (MQ=255)                                                                     aaTTCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTa                                                           <  4:196212/139‑1 (MQ=255)                                                                       ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                                              <  1:9654/86‑1 (MQ=255)                                                                       ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACAt                                                                                                              >  2:9654/1‑86 (MQ=255)                                                                       ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACg                                                         >  8:425989/1‑139 (MQ=255)                                                                       ttCAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACg                                                         <  5:84797/139‑1 (MQ=255)                                                                         cAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGa                                                                                         <  6:3654/105‑1 (MQ=255)                                                                         cAGTATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGa                                                                                         >  5:3654/1‑105 (MQ=255)                                                                            tATTTTTTGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCAt                                                    >  3:184988/1‑139 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  6:429594/138‑1 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  8:3864/138‑1 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  6:165317/138‑1 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  4:12029/138‑1 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  5:346066/138‑1 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  8:175973/138‑1 (MQ=255)                                                                                ttttGTCAATGATAAATCGGGCCTCAATACGACAACATTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  2:293798/138‑1 (MQ=255)                                                                                ttttGGCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTc                                                 <  1:145387/138‑1 (MQ=255)                                                                                     tCAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCa                                            <  7:7245/138‑1 (MQ=255)                                                                                      cAATGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATa                                          >  3:131125/1‑139 (MQ=255)                                                                                       aaTGATAAATCGTGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATa                                          <  6:64691/138‑1 (MQ=255)                                                                                       aaTGATAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATAc                                         <  8:375637/139‑1 (MQ=255)                                                                                         tGATATATCGGGCCTCAATACGACATCTTTATCTAAATATACCTGTCTGATCTGATCCAGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACat                                       <  8:175356/139‑2 (MQ=255)                                                                                            tAAATCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGt                                     <  2:358976/138‑1 (MQ=255)                                                                                             aaaTCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGGCCGCCTGTTACGTCCATTTCCTGCATACATGTTa                                   <  2:361199/139‑1 (MQ=255)                                                                                              aaTCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTa                                   <  3:325250/138‑1 (MQ=255)                                                                                              aaTCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTAc                                  <  1:304816/139‑1 (MQ=255)                                                                                                tCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg                                <  4:359204/139‑1 (MQ=255)                                                                                                tCGGGCCTCAATACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg                                <  3:428782/139‑1 (MQ=255)                                                                                                    gcctcaaTACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg                                <  7:425989/130‑1 (MQ=255)                                                                                                     cctcaaTACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGtaca                           >  7:57/5‑139 (MQ=255)                                                                                                         aaTACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 <  1:22314/65‑1 (MQ=255)                                                                                                         aaTACGACAACTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGt                                                                                                 >  2:22314/1‑65 (MQ=255)                                                                                                                caactatttCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATcc                >  8:250709/7‑139 (MQ=255)                                                                                                                caacTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATcc                >  5:50131/4‑139 (MQ=255)                                                                                                                caacTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATcc                >  4:56559/4‑139 (MQ=255)                                                                                                                   cTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg                                >  6:231032/1‑120 (MQ=255)                                                                                                                   cTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCg                                <  5:231032/120‑1 (MQ=255)                                                                                                                   cTTTTTCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATCCTg              >  4:26857/1‑138 (MQ=255)                                                                                                                      tttCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATa                         >  3:394660/1‑124 (MQ=255)                                                                                                                      tttCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATa                         <  4:394660/124‑1 (MQ=255)                                                                                                                      tttCTAAATATACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATCCTGaaa           <  7:250709/138‑1 (MQ=255)                                                                                                                             atatACATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATCCTGAAAGCTcgcga   <  3:26857/139‑2 (MQ=255)                                                                                                                              tataCATGTCTGATCTGATCCTGAGGGACATCTGTCTGGACCGTCATCATGACTCTTATGCACTTTTTCAGACCGCCTGTTACGTCCATTTCCTGCATACATGTTACCGGTACATACTGCCATCCTGAAAGCTcgcgaa  <  4:184988/139‑3 (MQ=255)                                                                                                                                      |                                                                                                                                   TAACTCAACTCATTC‑AATCGCTTTATACACACTCTTGTGTATTTCTAAGCTGTTCCTATCGTATTACAATTCAGTATTTTTTGTCAATGATAAATCGGGTCTTAATACAACGGCTTTTTCTAAATATACATGCCTGATCCGTTCCTGAGGAACATCTGTCTGGACGGTCATCATGACTCTGATGCACTTTTTCAGACCGCCGGTTACGTCCATTTCCTGCATACAGGTTACCGGCACATACTGCCATCCTGAAAGCTCACGGA  >  CP006881/2195434‑2195696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑