BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,196,334	C→T	S211N (AGT→AAT)	U712_11005 ←	3‑dehydroquinate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,196,334	0	C	T	100.0%	358.4 / NA	112	S211N (AGT→AAT)	U712_11005	3‑dehydroquinate synthase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (50/62); total (50/62)

Only 100 of 112 total aligned reads displayed.

TTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGATGCTTTTATTGAAATCCCTTTAAAAATCATGTCATTCAGCTGATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTG  >  CP006881/2196201‑2196466

ttCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                                                                 <  5:173907/139‑1 (MQ=255)

ttCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                                                                 <  3:85729/139‑1 (MQ=255)

 tccgCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGa                                                                                                                                >  1:301485/4‑139 (MQ=255)

   cgCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                                                              >  8:405359/2‑139 (MQ=255)

   cgCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                                                              >  5:167524/2‑139 (MQ=255)

   cgCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                                                              >  3:107397/2‑139 (MQ=255)

    gCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGata                                                                                                                              >  7:398478/1‑138 (MQ=255)

     ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                                                             >  7:280091/1‑138 (MQ=255)

     ccTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                                                             >  7:169803/1‑138 (MQ=255)

      cTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCa                                                                                                                           <  8:56049/139‑1 (MQ=255)

         aaCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                                                                         <  8:78506/138‑1 (MQ=255)

         aaCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                                                                         >  4:277398/1‑138 (MQ=255)

         aaCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAAGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATTTCATTAAGCTGATCATTAGTGATATCACg                                                                                                                         <  7:160367/138‑1 (MQ=255)

          aCGGGATGGCCGAGCGTATGCCCAAAGTTTTACTAAGCTCTTATCCCCTGTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCa                                                                                                                       <  5:113433/139‑1 (MQ=255)

          aCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCa                                                                                                                       <  2:143465/139‑1 (MQ=255)

          aCGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCa                                                                                                                       <  8:228746/139‑1 (MQ=255)

             gCATGGCCGAGCGTATGCCCTAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTg                                                                                                                    <  6:317546/139‑1 (MQ=255)

             gCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                                                             >  5:422708/1‑130 (MQ=255)

             gCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGatat                                                                                                                             <  6:422708/130‑1 (MQ=255)

             gCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTg                                                                                                                    <  4:228328/139‑1 (MQ=255)

                tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 <  5:398947/139‑2 (MQ=255)

                tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 <  1:265732/139‑2 (MQ=255)

                tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 >  3:222563/1‑138 (MQ=255)

                tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 <  2:342056/139‑2 (MQ=255)

                tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 <  2:301485/139‑2 (MQ=255)

                tGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCATTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 >  8:159267/1‑138 (MQ=255)

                      aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACCGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCCGCTGATCATTAGTGATATCACGCAGTGAGTGGatat                                                                                                           >  8:260560/1‑139 (MQ=255)

                      aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGatat                                                                                                           >  1:359369/1‑139 (MQ=255)

                      aGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTGTAAAAATCATGTCATTCAGCTGATCATTAGTGATATAACGCAGTGAGTGGatat                                                                                                           >  6:161377/1‑139 (MQ=255)

                            tgcccaaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGATATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCCCGCAGTGAGTGGATATTcag                                                                                                       >  7:8561/7‑137 (MQ=255)

                            tgcccaaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTcag                                                                                                       >  6:43134/7‑137 (MQ=255)

                              cccaaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTcagcag                                                                                                    <  4:8185/134‑1 (MQ=255)

                                 aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                                                                >  3:45036/2‑138 (MQ=255)

                                 aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                                                                <  4:222563/138‑2 (MQ=255)

                                 aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                                                                >  2:403960/2‑138 (MQ=255)

                                 aaaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcc                                                                                                <  4:71540/138‑2 (MQ=255)

                                  aaGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGctcct                                                                                               >  6:381863/1‑137 (MQ=255)

                                         agtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGaaa                                                                                        <  6:167524/139‑1 (MQ=255)

                                         agtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGaaa                                                                                        <  6:364601/139‑1 (MQ=255)

                                         agtaagCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGaa                                                                                         <  1:63634/138‑1 (MQ=255)

                                             atctctTATTCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  5:255989/137‑1 (MQ=255)

                                             agatctTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGATTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  8:373918/136‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  1:418706/139‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  8:102934/139‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  8:376562/139‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  2:282568/139‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  8:398478/139‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  1:314302/139‑1 (MQ=255)

                                             agCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGATCCTCCAGAAACGct                                                                                    <  8:7070/139‑1 (MQ=255)

                                               ctctTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATTTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGctct                                                                                  >  5:534/1‑139 (MQ=255)

                                               ctctTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAgt                                                                                                                 >  6:40807/1‑107 (MQ=255)

                                                    aTCCCCTCTTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTc                                                                               <  8:169803/137‑1 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                                                                         <  1:131044/90‑1 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                                                                         >  2:131044/1‑90 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  1:252197/127‑1 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    >  2:252197/1‑127 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGAt                                                                         >  1:288696/1‑138 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGAt                                                                         >  3:393557/1‑138 (MQ=255)

                                                         ctctTCTTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGAt                                                                         >  6:342059/1‑138 (MQ=255)

                                                          tcttctTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCagcagc                                                                                                   <  1:88574/111‑1 (MQ=255)

                                                          tcttctTTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATa                                                                        >  2:336023/1‑138 (MQ=255)

                                                            ttcttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCCGCTCCTCCAGAATCGCTCTGTCATatagaa                                                                       >  4:240224/1‑132 (MQ=255)

                                                            tgcttTTTCATCCTGCTGAACGACAGCAGCATTAAAGGAAATGCCTTTAAAAATCATGTAATTCATATGATCATTAGTGATATCACGCAGTTAGTGGAGATTACGCAGCTCCTCCAGAAACACACTGTCATAGATaaat                                                                     >  6:341583/3‑138 (MQ=255)

                                                              cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAg                                                                    <  2:288696/138‑1 (MQ=255)

                                                              cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAg                                                                    <  8:280091/138‑1 (MQ=255)

                                                              cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAg                                                                    <  8:420745/138‑1 (MQ=255)

                                                              cttTTTCATCCTGCTGAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGc                                                                   >  4:214255/1‑139 (MQ=255)

                                                                        ctgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAAt                                                          <  6:150431/138‑1 (MQ=255)

                                                                        ctgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAAt                                                          <  6:93915/138‑1 (MQ=255)

                                                                         tgctgAACGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACg                                                                                                                         <  7:290247/74‑1 (MQ=255)

                                                                              aaCGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCt                                                   >  6:224052/1‑139 (MQ=255)

                                                                                cGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                                                                 >  4:88259/1‑59 (MQ=255)

                                                                                cGACAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTg                                                                                                                                 <  3:88259/59‑1 (MQ=255)

                                                                                   cAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGccct                                              >  7:113747/1‑137 (MQ=255)

                                                                                   cAGACGCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCAt                                              >  4:19987/1‑139 (MQ=255)

                                                                                     gacgCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    >  4:214001/4‑99 (MQ=255)

                                                                                     gacgCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  3:214001/96‑1 (MQ=255)

                                                                                        gatttaATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCgg                                         >  1:302177/3‑139 (MQ=255)

                                                                                        gCTTTAATTGAAATGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCg                                          >  3:385308/1‑138 (MQ=255)

                                                                                                  aaaTGCCTTTAAAAATCATGTCATTCAGCTGATCATTGGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCg                                          >  1:323360/1‑128 (MQ=255)

                                                                                                  aaaTGCCTTTAAAAATCATGTCATTCAGCTGATCATTGGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCg                                          <  2:323360/128‑1 (MQ=255)

                                                                                                  aaaTGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGct                                                                                    <  7:97583/86‑1 (MQ=255)

                                                                                                  aaaTGCCTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTACTCACTTCTGCCATTCCGGACCTAAGctc                               >  1:235481/1‑139 (MQ=255)

                                                                                                    atgccTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGaa                                                                                         >  5:310326/4‑79 (MQ=255)

                                                                                                    atgccTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCtt                             >  3:359839/4‑139 (MQ=255)

                                                                                                    atgccTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCtt                             >  6:306433/4‑139 (MQ=255)

                                                                                                    atgccTTTAAAAATCATGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTAtt                             >  2:164147/4‑139 (MQ=255)

                                                                                                                   aTGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGaa               <  7:159267/138‑1 (MQ=255)

                                                                                                                    tGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACg             <  5:224052/139‑1 (MQ=255)

                                                                                                                           cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa       <  7:405359/138‑1 (MQ=255)

                                                                                                                           cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa       <  4:385308/138‑1 (MQ=255)

                                                                                                                           cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa       <  4:45036/138‑1 (MQ=255)

                                                                                                                           cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTACTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa       <  5:30939/138‑1 (MQ=255)

                                                                                                                            aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat     <  3:277398/139‑3 (MQ=255)

                                                                                                                            aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat     <  3:19987/139‑3 (MQ=255)

                                                                                                                            aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat     <  3:170242/139‑3 (MQ=255)

                                                                                                                            aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat     <  2:302177/139‑3 (MQ=255)

                                                                                                                            aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat     <  5:381863/139‑3 (MQ=255)

                                                                                                                            aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat     <  5:342059/139‑3 (MQ=255)

                                                                                                                                 aTCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTg  <  5:43134/137‑1 (MQ=255)

TTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGATGCTTTTATTGAAATCCCTTTAAAAATCATGTCATTCAGCTGATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTG  >  CP006881/2196201‑2196466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`