Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,196,449	A→G	L173L (TTG→CTG)	U712_11005 ←	3‑dehydroquinate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,196,449	0	A	G	100.0%	320.9 / NA	97	L173L (TTG→CTG)	U712_11005	3‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (47/50);  total (47/50)

ATGTCATTCAGCTGATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGG  >  CP006881/2196316‑2196581                                                                                                                                      |                                                                                                                                     aTGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGaa                                                                                                                                  <  7:159267/138‑1 (MQ=255)  tGTCATTCAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACg                                                                                                                                <  5:224052/139‑1 (MQ=255)         cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa                                                                                                                          <  4:385308/138‑1 (MQ=255)         cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa                                                                                                                          <  7:405359/138‑1 (MQ=255)         cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa                                                                                                                          <  4:45036/138‑1 (MQ=255)         cAGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTACTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa                                                                                                                          <  5:30939/138‑1 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  3:170242/139‑3 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  3:19987/139‑3 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  2:302177/139‑3 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  3:277398/139‑3 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  6:534/139‑3 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  5:381863/139‑3 (MQ=255)          aGCTGATCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  5:342059/139‑3 (MQ=255)               aTCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTg                                                                                                                     <  5:43134/137‑1 (MQ=255)                  attagTGATATCACGCAGGGAGCGGATATGCAGCAGCTCCTCCAGAAACGCTCTGTCATAGCTAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATca                                                                                                                <  2:184168/135‑2 (MQ=255)                         atatGACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         <  3:240224/139‑1 (MQ=255)                         atatCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        >  8:255896/1‑122 (MQ=255)                         atatCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  7:255896/124‑3 (MQ=255)                         atatCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         >  2:42930/1‑139 (MQ=255)                         atatCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         <  4:415324/139‑1 (MQ=255)                          tatCACGCATTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         <  1:136297/138‑1 (MQ=255)                           atCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACg                                                                                                       >  2:289843/1‑139 (MQ=255)                           atCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACg                                                                                                       >  3:417972/1‑139 (MQ=255)                           atCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACg                                                                                                       >  8:443131/1‑139 (MQ=255)                            tCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTa                                                                                                                   <  2:131177/126‑1 (MQ=255)                            tCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTa                                                                                                                   >  1:131177/1‑126 (MQ=255)                                   gTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCgg                                                                                               <  7:443131/139‑1 (MQ=255)                                    tGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGc                                                                                              <  4:417972/139‑1 (MQ=255)                                    tGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGc                                                                                              >  1:342685/1‑139 (MQ=255)                                      agtggATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTg                                                                                            >  8:21880/4‑139 (MQ=255)                                              ttCAGCAGCTCCTCCAGAAACGCTCTGTCTTAGATAAAGGCGTGTTGAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                    >  1:134123/1‑137 (MQ=255)                                              ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                    >  2:424008/1‑137 (MQ=255)                                              ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                    >  6:154597/1‑137 (MQ=255)                                              ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                    >  3:1627/1‑137 (MQ=255)                                              ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                    <  5:161377/139‑3 (MQ=255)                                                 agcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCa                                                                                  <  3:214255/138‑1 (MQ=255)                                                 agcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCa                                                                                  <  1:403960/138‑1 (MQ=255)                                                  gcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCAcc                                                                                >  7:408987/1‑139 (MQ=255)                                                  gcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGAACGGCTTTCGGCTGATAAAACGCAcc                                                                                >  8:408753/1‑139 (MQ=255)                                                      ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACg                                                                                                                                <  8:23304/87‑1 (MQ=255)                                                      ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCt                                                                                                                      >  7:361580/1‑97 (MQ=255)                                                      ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCt                                                                                                                      <  8:361580/97‑1 (MQ=255)                                                      ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAt                                                                             >  8:127623/1‑138 (MQ=255)                                                      ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTACGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAt                                                                             >  7:432426/1‑138 (MQ=255)                                                      ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTCCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACg                                                                                                                                >  7:23304/1‑87 (MQ=255)                                                                    ctctGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAg                                                              >  6:353560/1‑139 (MQ=255)                                                                    ctctGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGCAAATCTGTATCATAGAGCACGGCTTTCTGCTGATAAAACGCACCGATTAGATATTTTCCAAg                                                              >  2:407719/1‑139 (MQ=255)                                                                         tCATAGCTAAAAGCGTGTATAATCACTTCAGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                          <  8:184616/138‑1 (MQ=255)                                                                         tCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                          <  4:107397/138‑1 (MQ=255)                                                                         tCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                          <  1:42930/138‑1 (MQ=255)                                                                              gATAAAAGCGTCTTTAATCACTTCTGCCATTCCGGAACTAAGCTCTTTTTCAGGCAGAGAACCCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAATACGCACCGATTAGATTTTTTCCAAGCGGATGGtt                                                     >  5:422185/1‑138 (MQ=255)                                                                                 aaaaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        >  7:414948/1‑66 (MQ=255)                                                                                 aaaaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaaat                                                                                                                        <  8:414948/68‑3 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAg                                                                                                                             >  1:127697/1‑61 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAg                                                                                                                             <  2:127697/61‑1 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa                                                                                                                          <  2:226280/64‑1 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGaa                                                                                                                          >  1:226280/1‑64 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  2:368039/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  7:342898/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  5:219837/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  8:29133/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  7:167644/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  8:354896/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  2:162746/1‑139 (MQ=255)                                                                                   aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACAGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                               >  3:184973/1‑139 (MQ=255)                                                                                       gtgtTTAATCACTTCTGCCATTCGGGACCTAAGCGCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                           <  8:113747/139‑2 (MQ=255)                                                                                       gtgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                           <  1:424008/139‑2 (MQ=255)                                                                                       gtgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                           <  1:336023/139‑2 (MQ=255)                                                                                        tgtTTAATCACTTCTGCCATTCCGGTCCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                          <  3:289256/123‑1 (MQ=255)                                                                                        tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                          >  4:289256/1‑123 (MQ=255)                                                                                        tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTActt                                          >  2:380891/1‑137 (MQ=255)                                                                                        tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGAACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTActt                                          >  6:385921/1‑137 (MQ=255)                                                                                         gtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt                                         >  3:448777/1‑139 (MQ=255)                                                                                          tttAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt                                         >  7:121296/1‑138 (MQ=255)                                                                                                   ttCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         >  3:310086/1‑65 (MQ=255)                                                                                                   ttCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         <  4:310086/65‑1 (MQ=255)                                                                                                      tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                            >  5:370104/1‑138 (MQ=255)                                                                                                      tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                            <  4:448777/139‑2 (MQ=255)                                                                                                        ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACTCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                            <  5:306433/137‑2 (MQ=255)                                                                                                        ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                            <  1:155432/137‑2 (MQ=255)                                                                                                        ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                            <  1:162746/137‑2 (MQ=255)                                                                                                             ccGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAAACTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGAGTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCAt                     >  8:190281/1‑139 (MQ=255)                                                                                                             ccGGACCTAAGCTC‑TTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATg                    >  1:252287/1‑139 (MQ=255)                                                                                                                gacctaaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcg                  >  7:379374/6‑139 (MQ=255)                                                                                                                     aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         >  6:40047/1‑47 (MQ=255)                                                                                                                     aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                         <  5:40047/47‑1 (MQ=255)                                                                                                                     aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGcc                >  6:399022/1‑136 (MQ=255)                                                                                                                      aGCTCTTTATCAGGCAGAGACCGCACGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAGTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCaaga            <  8:8561/139‑3 (MQ=255)                                                                                                                       gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag           <  4:393557/139‑1 (MQ=255)                                                                                                                       gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag           <  4:359839/139‑1 (MQ=255)                                                                                                                           tttttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtc       >  1:217526/1‑139 (MQ=255)                                                                                                                             tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg      >  3:163043/1‑138 (MQ=255)                                                                                                                             tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg      >  1:323644/1‑138 (MQ=255)                                                                                                                              ttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt     <  2:342685/138‑1 (MQ=255)                                                                                                                              ttCAGGAAGAGAACGCAGGATATATGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt     <  1:164147/138‑1 (MQ=255)                                                                                                                                 aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg  <  4:163043/138‑1 (MQ=255)                                                                                                                                 aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg  <  2:323644/138‑1 (MQ=255)                                                                                                                                      |                                                                                                                                     ATGTCATTCAGCTGATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGG  >  CP006881/2196316‑2196581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑