Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,196,462	G→A	D168D (GAC→GAT)	U712_11005 ←	3‑dehydroquinate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,196,462	0	G	A	100.0%	274.2 / NA	87	D168D (GAC→GAT)	U712_11005	3‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (45/42);  total (45/42)

ATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCA  >  CP006881/2196330‑2196597                                                                                                                                     |                                                                                                                                        aTCATTAGTGATATCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTg                                                                                                                                     <  5:43134/137‑1 (MQ=255)    attagTGATATCACGCAGGGAGCGGATATGCAGCAGCTCCTCCAGAAACGCTCTGTCATAGCTAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATca                                                                                                                                <  2:184168/135‑2 (MQ=255)           atatGACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         <  3:240224/139‑1 (MQ=255)           atatCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         <  4:415324/139‑1 (MQ=255)           atatCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         >  2:42930/1‑139 (MQ=255)            tatCACGCATTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         <  1:136297/138‑1 (MQ=255)             atCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACg                                                                                                                       >  3:417972/1‑139 (MQ=255)             atCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACg                                                                                                                       >  8:443131/1‑139 (MQ=255)             atCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACg                                                                                                                       >  2:289843/1‑139 (MQ=255)              tCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTa                                                                                                                                   >  1:131177/1‑126 (MQ=255)              tCACGCAGTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTa                                                                                                                                   <  2:131177/126‑1 (MQ=255)                     gTGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCgg                                                                                                               <  7:443131/139‑1 (MQ=255)                      tGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGc                                                                                                              <  4:417972/139‑1 (MQ=255)                      tGAGTGGATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGc                                                                                                              >  1:342685/1‑139 (MQ=255)                        agtggATATTCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTg                                                                                                            >  8:21880/4‑139 (MQ=255)                                ttCAGCAGCTCCTCCAGAAACGCTCTGTCTTAGATAAAGGCGTGTTGAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                    >  1:134123/1‑137 (MQ=255)                                ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                    >  6:154597/1‑137 (MQ=255)                                ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                    <  5:161377/139‑3 (MQ=255)                                ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                    >  3:1627/1‑137 (MQ=255)                                ttCAGCAGCTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATaaaacg                                                                                                    >  2:424008/1‑137 (MQ=255)                                   agcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCa                                                                                                  <  3:214255/138‑1 (MQ=255)                                   agcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCa                                                                                                  <  1:403960/138‑1 (MQ=255)                                    gcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCAcc                                                                                                >  7:408987/1‑139 (MQ=255)                                    gcagcTCCTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGAACGGCTTTCGGCTGATAAAACGCAcc                                                                                                >  8:408753/1‑139 (MQ=255)                                        ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCt                                                                                                                                      >  7:361580/1‑97 (MQ=255)                                        ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCt                                                                                                                                      <  8:361580/97‑1 (MQ=255)                                        ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAt                                                                                             >  8:127623/1‑138 (MQ=255)                                        ctcctcCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTACGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAt                                                                                             >  7:432426/1‑138 (MQ=255)                                                      ctctGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAg                                                                              >  6:353560/1‑139 (MQ=255)                                                      ctctGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGCAAATCTGTATCATAGAGCACGGCTTTCTGCTGATAAAACGCACCGATTAGATATTTTCCAAg                                                                              >  2:407719/1‑139 (MQ=255)                                                           tCATAGCTAAAAGCGTGTATAATCACTTCAGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                          <  8:184616/138‑1 (MQ=255)                                                           tCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                          <  4:107397/138‑1 (MQ=255)                                                           tCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                          <  1:42930/138‑1 (MQ=255)                                                                gATAAAAGCGTCTTTAATCACTTCTGCCATTCCGGAACTAAGCTCTTTTTCAGGCAGAGAACCCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAATACGCACCGATTAGATTTTTTCCAAGCGGATGGtt                                                                     >  5:422185/1‑138 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  7:167644/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  2:368039/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  8:354896/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  8:29133/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  7:342898/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  5:219837/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  2:162746/1‑139 (MQ=255)                                                                     aaGCGTGTTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACAGATTAGATTTTTTCCAAGCGGATGGTTCACGGc                                                               >  3:184973/1‑139 (MQ=255)                                                                         gtgtTTAATCACTTCTGCCATTCGGGACCTAAGCGCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                                           <  8:113747/139‑2 (MQ=255)                                                                         gtgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                                           <  1:336023/139‑2 (MQ=255)                                                                         gtgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTAct                                                           <  1:424008/139‑2 (MQ=255)                                                                          tgtTTAATCACTTCTGCCATTCCGGTCCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                          <  3:289256/123‑1 (MQ=255)                                                                          tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGa                                                                          >  4:289256/1‑123 (MQ=255)                                                                          tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTActt                                                          >  2:380891/1‑137 (MQ=255)                                                                          tgtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGAACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTActt                                                          >  6:385921/1‑137 (MQ=255)                                                                           gtTTAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt                                                         >  3:448777/1‑139 (MQ=255)                                                                            tttAATCACTTCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACttt                                                         >  7:121296/1‑138 (MQ=255)                                                                                     ttCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         >  3:310086/1‑65 (MQ=255)                                                                                     ttCTGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         <  4:310086/65‑1 (MQ=255)                                                                                        tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                            <  4:448777/139‑2 (MQ=255)                                                                                        tGCCATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                            >  5:370104/1‑138 (MQ=255)                                                                                          ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACTCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                            <  5:306433/137‑2 (MQ=255)                                                                                          ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                            <  1:155432/137‑2 (MQ=255)                                                                                          ccATTCCGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGcg                                            <  1:162746/137‑2 (MQ=255)                                                                                               ccGGACCTAAGCTCTTTTTCAGGCAGAGAACGCAGGAAAACTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGAGTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCAt                                     >  8:190281/1‑139 (MQ=255)                                                                                               ccGGACCTAAGCTC‑TTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATg                                    >  1:252287/1‑139 (MQ=255)                                                                                                  gacctaaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATgcg                                  >  7:379374/6‑139 (MQ=255)                                                                                                       aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         <  5:40047/47‑1 (MQ=255)                                                                                                       aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCa                                                                                                                         >  6:40047/1‑47 (MQ=255)                                                                                                       aaGCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGcc                                >  6:399022/1‑136 (MQ=255)                                                                                                        aGCTCTTTATCAGGCAGAGACCGCACGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGAGTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCaaga                            <  8:8561/139‑3 (MQ=255)                                                                                                         gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag                           <  4:393557/139‑1 (MQ=255)                                                                                                         gCTCTTTTTCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAagag                           <  4:359839/139‑1 (MQ=255)                                                                                                             tttttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtc                       >  1:217526/1‑139 (MQ=255)                                                                                                               tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg                      >  1:323644/1‑138 (MQ=255)                                                                                                               tttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcg                      >  3:163043/1‑138 (MQ=255)                                                                                                                ttCAGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt                     <  2:342685/138‑1 (MQ=255)                                                                                                                ttCAGGAAGAGAACGCAGGATATATGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGcgtcgt                     <  1:164147/138‑1 (MQ=255)                                                                                                                   aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg                  <  4:163043/138‑1 (MQ=255)                                                                                                                   aGGCAGAGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAgg                  <  2:323644/138‑1 (MQ=255)                                                                                                                      cagaGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGTTTTTATCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt              <  1:407719/136‑1 (MQ=255)                                                                                                                      cagaGAACGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCAtt              <  2:359369/136‑1 (MQ=255)                                                                                                                           aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt         <  8:167644/139‑1 (MQ=255)                                                                                                                           aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt         <  2:252287/139‑1 (MQ=255)                                                                                                                           aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt         <  4:1627/139‑1 (MQ=255)                                                                                                                           aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt         <  7:29133/139‑1 (MQ=255)                                                                                                                           aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt         <  5:154597/139‑1 (MQ=255)                                                                                                                           aaCGCAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGAGAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGAt         <  5:353560/139‑1 (MQ=255)                                                                                                                               cAGGAAATCTGTATCATAGATCACGGCTTTCGGCTGATAAAACGCACCGAATAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa     >  4:220272/1‑139 (MQ=255)                                                                                                                               cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa     >  2:242351/1‑139 (MQ=255)                                                                                                                               cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa     >  8:440742/1‑139 (MQ=255)                                                                                                                                aGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAAt    <  3:324714/139‑1 (MQ=255)                                                                                                                                  gAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCa  <  1:368039/139‑1 (MQ=255)                                                                                                                                     |                                                                                                                                        ATCACTGGTGATATCACGCAGTGAGCGGATATTCAGCAGCTCTTCCAGAAACGCTCTGTCATAGATAAAAGCGTGTTTAATCACTTCTGCCATTCCGGATCGAAGCTCTTTTTCAGGCAAAGAACGCAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCA  >  CP006881/2196330‑2196597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑