Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,774 G→A P64P (CCC→CCT)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,7740GA100.0% 365.6 / NA 115P64P (CCC→CCT) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (55/60);  total (55/60)

Only 100 of 115 total aligned reads displayed.

CCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTT  >  CP006881/2196640‑2196900
                                                                                                                                      |                                                                                                                              
ccTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGc                                                                                                                             >  3:425955/1‑138 (MQ=255)
       cacCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTc                                                                                                                     >  4:330023/1‑139 (MQ=255)
       cacCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATATTGTGTACATGACCATGGATTTTGCCTGCTCTCCACTCGGTACCGGCCCTTTTTTCACAGGCCATTTTTc                                                                                                                     >  5:56828/1‑139 (MQ=255)
          cGCCACCGCATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACCTGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  2:232100/1‑139 (MQ=255)
          cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  5:370617/1‑139 (MQ=255)
          cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  8:365142/1‑139 (MQ=255)
          cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  4:337066/1‑139 (MQ=255)
          cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  6:176561/1‑139 (MQ=255)
          cGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  6:49484/1‑139 (MQ=255)
          cGCCACCGAATGCGATGATGAATGAGGAGCTCTCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTACAGGTATTTTGCCTGCTCTCCAGACGGTACCGTCACGTTTTTGACAGTCCATTTTTCGTg                                                                                                                  >  4:210943/1‑139 (MQ=255)
           gCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTgc                                                                                                                 <  5:77674/139‑1 (MQ=255)
            ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTgca                                                                                                                >  4:2779/1‑139 (MQ=255)
            ccACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTg                                                                                                                  >  1:401595/1‑137 (MQ=255)
                 gAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCaaa                                                                                                           <  7:197165/139‑1 (MQ=255)
                 gAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCaaa                                                                                                           <  8:316763/139‑1 (MQ=255)
                      cgATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAg                                                                                                      <  8:128876/139‑1 (MQ=255)
                        atgatgCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCa                                                                                                    <  7:25835/139‑1 (MQ=255)
                         tgatgCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCAt                                                                                                   <  5:375359/139‑1 (MQ=255)
                           atgCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCAttt                                                                                                 <  3:330023/139‑1 (MQ=255)
                           atgCAAGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCAttt                                                                                                 <  6:37708/139‑1 (MQ=255)
                            tgCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTAACAGGCCATTTTTGTTTCAGGAAATGGAGCAttt                                                                                                 >  2:183336/1‑138 (MQ=255)
                              cATGAGGAGCGATCCATCTGAAACCGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  2:134123/139‑1 (MQ=255)
                              cATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  4:386991/139‑1 (MQ=255)
                              cATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  4:440501/139‑1 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCtt                                                                                                                   >  1:245330/1‑109 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCtt                                                                                                                   <  2:245330/109‑1 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCAttt                                                                                                 >  7:418286/1‑127 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCAttt                                                                                                 <  8:418286/127‑1 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATa                                                                                       >  7:390072/1‑137 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATa                                                                                       >  2:384989/1‑137 (MQ=255)
                                       cGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACa                                                                                     >  6:144746/1‑139 (MQ=255)
                                         aTCCATATGAAAACGACTCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAgg                                                                                   <  2:166616/139‑1 (MQ=255)
                                         aTCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  3:184545/128‑1 (MQ=255)
                                         aTCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              >  4:150385/1‑128 (MQ=255)
                                         aTCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              >  4:184545/1‑128 (MQ=255)
                                         aTCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACGTTTTTCACAGGCCATTTTTATTTCAGCAAATGGAGCATTTCATCACCAAACAgg                                                                                   >  4:309934/1‑139 (MQ=255)
                                              tatGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              >  4:436675/1‑123 (MQ=255)
                                              tatGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  3:436675/123‑1 (MQ=255)
                                                  aaaaCGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTATGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCAc                                                                           <  6:107963/138‑1 (MQ=255)
                                                        aaTCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATTGAGCATTTCATAACCATAAAGGCGGTCCActtctta                                                                     >  2:399354/1‑137 (MQ=255)
                                                                cACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGa                                                             >  7:407860/1‑138 (MQ=255)
                                                                 aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                            <  1:399354/138‑1 (MQ=255)
                                                                 aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                            <  3:337066/138‑1 (MQ=255)
                                                                 aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                            <  3:2779/138‑1 (MQ=255)
                                                                 aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                            <  7:365142/138‑1 (MQ=255)
                                                                     tGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAATTGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACaaa                                                         <  1:105880/137‑2 (MQ=255)
                                                                     tGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              >  2:326695/1‑100 (MQ=255)
                                                                       caattttGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCAGTTTTCTTGCAGCAAATGGAGCATTTCTTCCCCCTACAGGCGGTCCACTTCTTCATCCGTGACAAACAt                                                      >  8:310970/4‑138 (MQ=255)
                                                                         attttGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGGACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAAt                                                   <  8:342898/138‑1 (MQ=255)
                                                                             tgtgTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcct                                                <  1:384989/138‑2 (MQ=255)
                                                                               tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCCCAGGCCATATTTCTTGCCGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAGACGTGACACACATAATCCttgt                                             >  8:58997/1‑139 (MQ=255)
                                                                               tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAt                                                                   <  6:398069/117‑1 (MQ=255)
                                                                               tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAt                                                                   >  5:398069/1‑117 (MQ=255)
                                                                               tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCttgt                                             >  3:78654/1‑139 (MQ=255)
                                                                                     tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                       <  8:142508/139‑1 (MQ=255)
                                                                                     tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                       <  1:113891/139‑1 (MQ=255)
                                                                                     tGTCCATGGATTTTGCCTGCGCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                       <  7:269711/139‑1 (MQ=255)
                                                                                       tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCCCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACATCTTCATCCCTGACAAACATAATCCTAGTTAAAGccc                                     >  1:329722/1‑139 (MQ=255)
                                                                                       tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTACAGGc                                      <  3:220272/138‑1 (MQ=255)
                                                                                       tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                      <  1:232100/138‑1 (MQ=255)
                                                                                       tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                      <  7:1719/138‑1 (MQ=255)
                                                                                       tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                      <  1:430434/138‑1 (MQ=255)
                                                                                       tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                      <  5:49484/138‑1 (MQ=255)
                                                                                        ccATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                    <  8:222674/139‑1 (MQ=255)
                                                                                        ccATGGATTATGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                    <  2:61160/139‑1 (MQ=255)
                                                                                         cATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATg                                                                                                         >  5:174503/1‑69 (MQ=255)
                                                                                         cATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              >  7:304373/1‑80 (MQ=255)
                                                                                         cATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  8:304373/80‑1 (MQ=255)
                                                                                           tGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                 <  7:188407/123‑1 (MQ=255)
                                                                                           tGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                 >  8:188407/1‑123 (MQ=255)
                                                                                             gATTTTTCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCAACATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTa                               <  1:183336/139‑1 (MQ=255)
                                                                                               ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTTCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGCTTaaa                             <  5:144746/139‑3 (MQ=255)
                                                                                               ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                             <  7:96948/139‑3 (MQ=255)
                                                                                               ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                             <  3:309934/139‑3 (MQ=255)
                                                                                               ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                             <  8:390072/139‑3 (MQ=255)
                                                                                                tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                       <  2:444158/125‑1 (MQ=255)
                                                                                                tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                       >  1:444158/4‑128 (MQ=255)
                                                                                                tttgCCTGCTCTCCACTCGGTACCGTCACTTTATTCTCAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTGCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                             <  3:114398/135‑3 (MQ=255)
                                                                                                 ttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTAACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaaga                           >  7:221057/3‑139 (MQ=255)
                                                                                                  tgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              >  1:308020/2‑71 (MQ=255)
                                                                                                  tgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTtcat                                                                                              <  2:308020/70‑1 (MQ=255)
                                                                                                        ctctCCACTCGGTACCGTCTCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAAt                    <  5:96951/139‑1 (MQ=255)
                                                                                                        ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                            >  8:48006/1‑99 (MQ=255)
                                                                                                        ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                            <  7:48006/99‑1 (MQ=255)
                                                                                                        ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTaa                     >  7:14756/1‑138 (MQ=255)
                                                                                                                  ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCActtctt                                                                      <  1:149120/76‑1 (MQ=255)
                                                                                                                  ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCActtctt                                                                      >  2:149120/4‑79 (MQ=255)
                                                                                                                  ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCa            <  8:407860/134‑1 (MQ=255)
                                                                                                                  ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAGACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGGTTAAAGAGGTTAATAGTTCGCaag          >  3:421366/4‑138 (MQ=255)
                                                                                                                   gtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAAACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCAGTTTAAAGAGGTTAATAGTTCGCaagg         >  1:377173/3‑137 (MQ=255)
                                                                                                                    taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                             <  6:163293/117‑3 (MQ=255)
                                                                                                                    taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                             >  5:163293/2‑116 (MQ=255)
                                                                                                                      ccGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCctt      >  5:352448/1‑138 (MQ=255)
                                                                                                                       cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                 <  6:14076/95‑1 (MQ=255)
                                                                                                                       cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                 >  5:14076/1‑95 (MQ=255)
                                                                                                                       cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCcttt     >  5:184646/1‑137 (MQ=255)
                                                                                                                        gTCACTTTTTTCACAGGACATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGGTAATAGTTCGCAAGCCtttt    <  3:210943/139‑1 (MQ=255)
                                                                                                                         tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt   >  3:394352/1‑139 (MQ=255)
                                                                                                                          cccTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttttt  <  4:78654/137‑1 (MQ=255)
                                                                                                                              tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCTGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                      <  6:52283/99‑1 (MQ=255)
                                                                                                                                      |                                                                                                                              
CCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTT  >  CP006881/2196640‑2196900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑