Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,196,825	A→C	V47V (GTT→GTG)	U712_11005 ←	3‑dehydroquinate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,196,825	0	A	C	100.0%	294.7 / NA	90	V47V (GTT→GTG)	U712_11005	3‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (40/50);  total (40/50)

AAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTT  >  CP006881/2196690‑2196960                                                                                                                                        |                                                                                                                                        aaaaCGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTATGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCAc                                                                                                                                       <  6:107963/138‑1 (MQ=255)   aaCGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTACACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAATTGGAGCATTTCATCACCATACAGGCGGTCCActac                                                                                                                                    >  2:105880/1‑136 (MQ=255)       aaTCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATTGAGCATTTCATAACCATAAAGGCGGTCCActtctta                                                                                                                                 >  2:399354/1‑137 (MQ=255)               cACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGa                                                                                                                         >  7:407860/1‑138 (MQ=255)                aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                                                                                        <  3:2779/138‑1 (MQ=255)                aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                                                                                        <  3:337066/138‑1 (MQ=255)                aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                                                                                        <  7:365142/138‑1 (MQ=255)                aCTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                                                                                        <  1:399354/138‑1 (MQ=255)                    tGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAATTGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACaaa                                                                                                                     <  1:105880/137‑2 (MQ=255)                      caattttGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCAGTTTTCTTGCAGCAAATGGAGCATTTCTTCCCCCTACAGGCGGTCCACTTCTTCATCCGTGACAAACAt                                                                                                                  >  8:310970/4‑138 (MQ=255)                        attttGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGGACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAAt                                                                                                               <  8:342898/138‑1 (MQ=255)                            tgtgTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcct                                                                                                            <  1:384989/138‑2 (MQ=255)                              tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCCCAGGCCATATTTCTTGCCGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAGACGTGACACACATAATCCttgt                                                                                                         >  8:58997/1‑139 (MQ=255)                              tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAt                                                                                                                               <  6:398069/117‑1 (MQ=255)                              tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAt                                                                                                                               >  5:398069/1‑117 (MQ=255)                              tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCttgt                                                                                                         >  3:78654/1‑139 (MQ=255)                                tACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGtt                                                                                                        >  4:176787/1‑138 (MQ=255)                                    tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                   <  8:142508/139‑1 (MQ=255)                                    tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                   <  1:113891/139‑1 (MQ=255)                                    tGTCCATGGATTTTGCCTGCGCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                   <  7:269711/139‑1 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCCCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACATCTTCATCCCTGACAAACATAATCCTAGTTAAAGccc                                                                                                 >  1:329722/1‑139 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTACAGGc                                                                                                  <  3:220272/138‑1 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  <  4:425955/138‑1 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  <  7:1719/138‑1 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  <  5:49484/138‑1 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  <  1:430434/138‑1 (MQ=255)                                      tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  <  1:232100/138‑1 (MQ=255)                                       ccATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                                                                                <  8:222674/139‑1 (MQ=255)                                       ccATGGATTATGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                                                                                <  2:61160/139‑1 (MQ=255)                                          tGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                             >  8:188407/1‑123 (MQ=255)                                          tGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                             <  7:188407/123‑1 (MQ=255)                                            gATTTTTCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCAACATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTa                                                                                           <  1:183336/139‑1 (MQ=255)                                              ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTTCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGCTTaaa                                                                                         <  5:144746/139‑3 (MQ=255)                                              ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  3:309934/139‑3 (MQ=255)                                              ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  7:96948/139‑3 (MQ=255)                                              ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  8:390072/139‑3 (MQ=255)                                              ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  5:176561/139‑3 (MQ=255)                                               tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                   >  1:444158/4‑128 (MQ=255)                                               tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                   <  2:444158/125‑1 (MQ=255)                                               tttgCCTGCTCTCCACTCGGTACCGTCACTTTATTCTCAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTGCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  3:114398/135‑3 (MQ=255)                                                ttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTAACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaaga                                                                                       >  7:221057/3‑139 (MQ=255)                                                       ctctCCACTCGGTACCGTCTCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAAt                                                                                <  5:96951/139‑1 (MQ=255)                                                       ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                                                                                        <  7:48006/99‑1 (MQ=255)                                                       ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGAc                                                                                                                        >  8:48006/1‑99 (MQ=255)                                                       ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTaa                                                                                 >  7:14756/1‑138 (MQ=255)                                                                 ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCActtctt                                                                                                                                  <  1:149120/76‑1 (MQ=255)                                                                 ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCActtctt                                                                                                                                  >  2:149120/4‑79 (MQ=255)                                                                 ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCa                                                                        <  8:407860/134‑1 (MQ=255)                                                                 ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAGACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGGTTAAAGAGGTTAATAGTTCGCaag                                                                      >  3:421366/4‑138 (MQ=255)                                                                  gtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAAACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCAGTTTAAAGAGGTTAATAGTTCGCaagg                                                                     >  1:377173/3‑137 (MQ=255)                                                                   taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         >  5:163293/2‑116 (MQ=255)                                                                   taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  6:163293/117‑3 (MQ=255)                                                                    aCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCGTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCct                                                                   >  2:259210/1‑139 (MQ=255)                                                                     ccGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCctt                                                                  >  5:352448/1‑138 (MQ=255)                                                                      cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                             >  5:14076/1‑95 (MQ=255)                                                                      cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                             <  6:14076/95‑1 (MQ=255)                                                                      cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCcttt                                                                 >  5:184646/1‑137 (MQ=255)                                                                       gTCACTTTTTTCACAGGACATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGGTAATAGTTCGCAAGCCtttt                                                                <  3:210943/139‑1 (MQ=255)                                                                        tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt                                                               >  3:394352/1‑139 (MQ=255)                                                                        tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt                                                               >  7:178163/1‑139 (MQ=255)                                                                         cccTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttttt                                                              <  4:78654/137‑1 (MQ=255)                                                                             tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCTGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  <  6:52283/99‑1 (MQ=255)                                                                             tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                  >  5:52283/1‑99 (MQ=255)                                                                                     aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTa                                                                                                       >  5:203689/2‑86 (MQ=255)                                                                                     aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTa                                                                                                       <  6:203689/85‑1 (MQ=255)                                                                                     aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGt                                                  <  6:352448/138‑1 (MQ=255)                                                                                      ggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTc                                                 >  5:132045/1‑139 (MQ=255)                                                                                                cTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCAGTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTTATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                        <  6:370617/138‑1 (MQ=255)                                                                                                   gcagcaAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAAc                                       <  7:272765/136‑1 (MQ=255)                                                                                                              aGCATTTCATCACCATACAGGCGGTCCCCTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAgg                         >  5:437481/1‑139 (MQ=255)                                                                                                                cctttCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGaa                       <  8:133392/137‑1 (MQ=255)                                                                                                                cATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGaa                       <  8:178163/139‑1 (MQ=255)                                                                                                                     catcaCCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGt                  >  5:5800/1‑139 (MQ=255)                                                                                                                         aCCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGa              <  4:394352/139‑1 (MQ=255)                                                                                                                             tACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttt                                                                <  4:11015/85‑1 (MQ=255)                                                                                                                             tACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACAt          >  4:180980/1‑139 (MQ=255)                                                                                                                                aGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCa       <  4:79396/139‑1 (MQ=255)                                                                                                                                  gCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgt     >  2:435076/1‑139 (MQ=255)                                                                                                                                  gCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCATTTTTTCTGATACCTTGt                                                  >  6:332648/1‑94 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                         <  1:328754/52‑3 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGAt                                             >  5:74050/1‑96 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                        >  1:187419/1‑101 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                        <  5:312817/101‑1 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                        <  2:187419/101‑1 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                        >  6:312817/1‑101 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc  >  3:372414/1‑138 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc  >  3:173230/1‑138 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc  >  3:110896/1‑138 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAAAAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc  >  7:337331/1‑138 (MQ=255)                                                                                                                                     gTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTAGCAAGCCTGATTTCTGATACCTTGTCCTATAAAAAAATGATATGACGAGGAAGCAGTTTGAACATGCAgtgct  >  7:334605/1‑137 (MQ=255)                                                                                                                                        |                                                                                                                                        AAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTT  >  CP006881/2196690‑2196960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑