Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	795,598	A→C	*540C (TGA→TGC)  E7A (GAG→GCG)	U712_03845 → U712_03850 →	Sensor protein CitS Transcriptional regulatory protein CitT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	795,598	0	A	C	100.0%	313.0 / NA	96	*540C (TGA→TGC)  E7A (GAG→GCG)	U712_03845 U712_03850	Sensor protein CitS Transcriptional regulatory protein CitT
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (51/45);  total (51/45)

TGTGAAAGACTCAGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGAGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAACACAAGGCTGATTTGCTT  >  CP006881/795466‑795731                                                                                                                                     |                                                                                                                                      tgtgAAAGACTCAGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCAGTTGATTCACATCGCGATTGCggagga                                                                                                                                 >  6:116676/1‑139 (MQ=255)      aaGACTCAGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGAtt                                                                                                                            >  6:206061/1‑139 (MQ=255)             aGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGTAGGATGATTTTCGAGt                                                                                                                     >  1:311262/1‑139 (MQ=255)             aGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGt                                                                                                                     >  3:95728/1‑139 (MQ=255)             aGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGt                                                                                                                     >  1:399820/1‑139 (MQ=255)             aGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGt                                                                                                                     >  1:439515/1‑139 (MQ=255)             aGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTAACATCGCGATTGCGGAGGATGATTTTCGAGt                                                                                                                     >  6:34254/1‑139 (MQ=255)               tGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACACAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAg                                                                                                                      <  3:297493/136‑1 (MQ=255)                  gTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTgcgc                                                                                                                <  5:166253/139‑1 (MQ=255)                         gggCGGCTGGATCGAACTTGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAATGGGGAATCCATTTGATACACATCGCGATAGCGGAGTATGAAATACGAGAAGCGCAAATCCa                                                                                                         >  4:422159/1‑139 (MQ=255)                         gggCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGATTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCa                                                                                                         >  7:125693/1‑139 (MQ=255)                         gggCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAg                                                                                                                      <  6:175817/126‑1 (MQ=255)                         gggCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAg                                                                                                                      >  5:175817/1‑126 (MQ=255)                         gggCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTgcgc                                                                                                                >  4:379423/1‑132 (MQ=255)                         gggCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTgcgc                                                                                                                <  3:379423/132‑1 (MQ=255)                          ggcggcTGGATCGAACTGGCTAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCAt                                                                                                        <  8:351238/139‑1 (MQ=255)                             ggcTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCAt                                                                                                        >  7:374212/1‑136 (MQ=255)                               cTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATgagag                                                                                                   <  7:115751/139‑1 (MQ=255)                               cTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGAATCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATgagag                                                                                                   <  6:420212/139‑1 (MQ=255)                               cTGGAGCGACCGGGCGAATCAAACACCTGGCGGGGCGGTATTGACGGTCTTTATACCGAAGGAGAAACAAAGGGGGACACCATTTGATTCACATCCCGATTGCGGAGGATGATTTTCGAGTTGCGAAAATCCATgagag                                                                                                   <  8:42234/139‑1 (MQ=255)                               cTGGAGCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATgagag                                                                                                   <  4:307644/139‑1 (MQ=255)                               cTGCATCGAACTGGCCAAACAAAAAATTGGCGGGGCGGTATTCACTGTATTTAAACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATgagag                                                                                                   <  1:219480/139‑1 (MQ=255)                                         cttccGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGTGAATCCTTTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCGATGAGAGATTGATTaaa                                                                                         <  3:422159/135‑1 (MQ=255)                                         cTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         <  2:439515/139‑1 (MQ=255)                                         cTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         <  6:186273/139‑1 (MQ=255)                                         cTGGCGAATAAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         <  1:178468/139‑1 (MQ=255)                                                 tCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGa                                                                                 >  7:154820/1‑139 (MQ=255)                                                  cAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGAt                                                                                <  8:74560/139‑1 (MQ=255)                                                   aaaaaaCTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGAt                                                                                <  8:94738/138‑1 (MQ=255)                                                            gcggggcggTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGAt                                                                                <  8:122719/129‑1 (MQ=255)                                                            gcggggcggTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGAt                                                                                >  7:122719/1‑129 (MQ=255)                                                            gcggggcggTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGa                                                                      >  6:322972/1‑139 (MQ=255)                                                              ggggcggTATTCACTGTAGTTATACCGAAGGAGAAACAAAGGGGGACTCCATTTGATTCACATCGCGATTGCGGAGGATGATTATCGAGGTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGAtt                                                                    <  4:149422/139‑1 (MQ=255)                                                                            tGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAggcggc                                                      >  5:143613/1‑139 (MQ=255)                                                                             gTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGa                                                                                 >  1:399128/1‑111 (MQ=255)                                                                             gTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGa                                                                                 <  2:399128/111‑1 (MQ=255)                                                                               ataaataCCCAAGGAGAAACAAAGCCGGAATCCATTAGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTAGCGCAAATCCATGAGAGATTCATTAAAAAGCTTCATGCATTCAAGATAATCGGCAACGCGGCTaa                                                   >  6:126262/5‑139 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTgcgc                                                                                                                <  8:90650/78‑1 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTgcgc                                                                                                                >  7:90650/1‑78 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         >  1:300025/1‑101 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         <  2:300025/101‑1 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTaa                                                   >  7:119307/1‑139 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTaa                                                   >  2:107030/1‑139 (MQ=255)                                                                               aTTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGAGGCTaa                                                   >  5:352557/1‑139 (MQ=255)                                                                                   ataCCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGc                                                >  6:389447/1‑138 (MQ=255)                                                                                     aCCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaa                                              >  7:213805/1‑138 (MQ=255)                                                                                      ccGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaa                                              >  2:268756/1‑137 (MQ=255)                                                                                      ccGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaa                                              >  3:202419/1‑137 (MQ=255)                                                                                       cGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTAGCGCAAATGCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAag                                           <  8:12144/139‑1 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAAt                                                                                                            >  5:227500/1‑73 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAAt                                                                                                            <  6:227500/73‑1 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATgagag                                                                                                   <  8:39858/82‑1 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATgagag                                                                                                   >  7:39858/1‑82 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         <  1:352101/92‑1 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         >  2:352101/1‑92 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGAt                                                                                <  5:111077/101‑1 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGAt                                                                                >  6:111077/1‑101 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAggcggc                                                      >  8:413936/1‑127 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAggcggc                                                      <  7:413936/127‑1 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  7:355736/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  7:420646/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  6:48553/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  5:274825/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  7:406617/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  6:248016/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  4:2297/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  3:265194/1‑137 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAaga                                          >  2:362982/1‑139 (MQ=255)                                                                                        gAAGGAGAAACAAAGGGGGAATCCATATGATTCACATCGCGATTGCGTAGGATGATTTTCGAGATGCGAAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCaaaa                                            >  4:80755/1‑137 (MQ=255)                                                                                          aGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAgat                                                                                                 >  3:205296/1‑82 (MQ=255)                                                                                          aGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAgat                                                                                                 >  3:105204/1‑82 (MQ=255)                                                                                          aGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAgat                                                                                                 <  4:205296/82‑1 (MQ=255)                                                                                          aGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAgat                                                                                                 <  4:105204/82‑1 (MQ=255)                                                                                          aGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         <  5:247493/90‑1 (MQ=255)                                                                                          aGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTaaa                                                                                         >  6:247493/1‑90 (MQ=255)                                                                                               aaaCAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTg                                   >  6:315405/1‑139 (MQ=255)                                                                                                aaCAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTgg                                  <  1:18367/139‑1 (MQ=255)                                                                                                aaCAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTgg                                  <  8:406617/139‑1 (MQ=255)                                                                                                aaCAAAGGGGGAATCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTgg                                  <  1:103254/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCttt                            >  2:241452/1‑134 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       <  3:2297/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       <  3:222134/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       <  8:154820/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       <  5:116676/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       <  5:48553/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       <  6:143613/139‑1 (MQ=255)                                                                                                           aaTCCATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGAGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCttt                            <  1:241452/134‑1 (MQ=255)                                                                                                            agccATTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAg                       >  5:9968/3‑138 (MQ=255)                                                                                                                aTTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAaca                  <  4:95728/139‑1 (MQ=255)                                                                                                                aTTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAaca                  <  8:224903/139‑1 (MQ=255)                                                                                                                aTTTGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAaca                  <  1:107030/139‑1 (MQ=255)                                                                                                                  ttGATTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAacac                 >  5:313299/1‑138 (MQ=255)                                                                                                                     aTTCACATCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAACACAAgg             <  5:206061/139‑1 (MQ=255)                                                                                                                         acaTCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAACACAAGGCTGa         >  1:145189/1‑139 (MQ=255)                                                                                                                           aTCGCGATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAACACAAGGCTGAtt       >  7:421830/1‑139 (MQ=255)                                                                                                                                gATTGCGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAACACAAGGCTGATTTGCtt  <  2:399820/139‑1 (MQ=255)                                                                                                                                     |                                                                                                                                      TGTGAAAGACTCAGTGCGTGAACTGGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCACTGTATTTATACCGAAGGAGAAACAAAGGGGGAATCCATTTGATTCACATCGCGATTGAGGAGGATGATTTTCGAGTTGCGCAAATCCATGAGAGATTGATTAAACAGCTTGATGGATTCAAGATTATCGGCAAGGCGGCTAACGCAAAAGAGACATTGGCGCTTTTGAAGGAACACAAGGCTGATTTGCTT  >  CP006881/795466‑795731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑