| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,198,692 | T→A | I97I (ATA→ATT) | U712_11015 ← | Chemotaxis protein methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,198,692 | 0 | T | A | 95.0% | 114.4 / ‑1.6 | 40 | I97I (ATA→ATT) | U712_11015 | Chemotaxis protein methyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base A (20/18); total (21/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.41e-01 | |||||||||||
CGCCTTTTTTCGCTTTCTCCAATGCTTTTTCATCAATATCAGTCGCCAGGATCTGAAAGCCGGGAAGACTTTTTTGCTGATCCAAAAGCATGGCAAGCGTGTAAGGCTCCTCACCCGTTGAGCAGGCGGCACTCCATATCTTTAAAGGCTTACCGTTCTTGATTAACGGCAGAATAGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCATTTAAGAGGG > CP006881/2198556‑2198819 | cGCCTTTTTTCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCaaat > 2:283264/1‑139 (MQ=255)cGCCTTTTTTCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCaaat > 6:355671/1‑139 (MQ=255) ccTTTTTTCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAATCAAGGCAAGCGTGTATGGCTCCTCCCCCGTTGCGCAGGCGGCCCTCCaaatat > 2:441274/1‑137 (MQ=255) ccTTTTTTCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCaaattt > 6:223418/1‑137 (MQ=255) ttttCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTa < 6:150741/138‑1 (MQ=255) ttttCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTa < 6:389967/138‑1 (MQ=255) tttCGCTTTTTCCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTaa < 1:441274/138‑1 (MQ=255) ttttcCAATGCTTTTTCATCAATATCCGTCGCTAATATCAGATAGCCCGGAAGACCTTTTTGCGGGTCCAATAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTag < 8:314438/136‑2 (MQ=255) tttcCAATGCTTTTTCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTag < 8:428353/136‑2 (MQ=255) tttCATCAATATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCAGGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGAtt < 4:112376/137‑1 (MQ=255) aaTATCCGTCGCTAAAATCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACGCCAAATTTTTTAAGGCCTAGAGGTCTTGATTAACGGCAg > 4:1523/1‑138 (MQ=255) aaTATCAGTCGCCAGGATCTGAAAGCCGGGAAGACTTTTTTGCTGATCCAAAAGCATGGCAAGCGTGTAAGGCTCCTCACCCGTTGAGCAGGCGGCACTCCATATCTTTAAAGGCTTACCGTTCTTGATTAACGGCAg > 6:427556/1‑138 (MQ=255) aaaTCTGATAGCCCGGAAGACCTTTTTGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAg < 6:282011/137‑1 (MQ=255) tttttGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTa > 4:206269/1‑139 (MQ=255) tGCTGGTCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCTCTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAATAACTTCCCATCTTTTATTATTACGa > 3:11860/1‑138 (MQ=255) gtCCAAAAGCATGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAAt > 4:85657/2‑139 (MQ=255) tGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACAtt < 1:51100/139‑1 (MQ=255) tGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACAtt > 1:437995/1‑139 (MQ=255) tGGCAAGCGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACAtt > 3:66275/1‑139 (MQ=255) tGGCAAGCGTGTAAGGCTCCTCACCCGTTGAGCAGGCGGCACTCCATATCTTTAAAGGCTTACCGTTCTTGATTAACGGCAGAATAGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACAtt < 5:427556/139‑1 (MQ=255) cGTGTATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGt > 4:177009/1‑138 (MQ=255) gtgtATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCa < 6:71533/139‑1 (MQ=255) tgtATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATATAATTCTGAAACATTGATCGTCAt > 6:188295/1‑139 (MQ=255) gtATGGCTCCTCCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCAtt < 4:66275/139‑1 (MQ=255) ctcctcCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTc > 4:268357/1‑138 (MQ=255) tcctccCCCCTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTATCAAGAACTTCCCATATTTTTTAATTACTATAAAATTCTGAAACATTGATCGTCATTATGTcc > 4:292628/1‑138 (MQ=255) ctcCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAAt > 3:49333/1‑139 (MQ=255) ctcCCCCGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAAt > 5:257527/1‑139 (MQ=255) cccccGTTGAGCAGGCGGCACTCCAAATTTTTAAGGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGt > 6:338884/3‑139 (MQ=255) cccccGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGt > 3:230292/3‑139 (MQ=255) cccccGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGt > 6:351371/3‑139 (MQ=255) cccccGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATACTGAAACATTGATCGTCATTCTGTCCAATGt > 4:361172/3‑139 (MQ=255) ccccGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGtt < 1:275773/138‑1 (MQ=255) ccccGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGtt < 6:257527/138‑1 (MQ=255) ccccGTTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGtt < 4:49333/138‑1 (MQ=255) ccccGGTGAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGtt < 1:249941/138‑1 (MQ=255) gAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCAttt > 6:183947/1‑138 (MQ=255) gAGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCAttt > 8:158340/1‑138 (MQ=255) aGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATaaaa > 6:182786/1‑97 (MQ=255) aGCAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATaaaa < 5:182786/97‑1 (MQ=255) cAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCATTTAaga < 5:351371/139‑1 (MQ=255) cAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCATTTAaga < 5:223418/139‑1 (MQ=255) cAGGCGGCACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCATTTAaga < 3:438552/139‑1 (MQ=255) gcggcACTCCAAATTTTTAAAGGCCTAGAGGTCTTGATTAACGGCAGAATTGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCATTTAagagag > 7:209/1‑137 (MQ=255) | CGCCTTTTTTCGCTTTCTCCAATGCTTTTTCATCAATATCAGTCGCCAGGATCTGAAAGCCGGGAAGACTTTTTTGCTGATCCAAAAGCATGGCAAGCGTGTAAGGCTCCTCACCCGTTGAGCAGGCGGCACTCCATATCTTTAAAGGCTTACCGTTCTTGATTAACGGCAGAATAGCAGTCTCAAGAACTTCCCATCTTTTATAATTACGATAAAATTCTGAAACATTGATCGTCATTCTGTCCAATGTTTCATTTAAGAGGG > CP006881/2198556‑2198819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |