Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,199,177 A→G intergenic (‑195/+45) U712_11015 ← / ← U712_11020 Chemotaxis protein methyltransferase/Nucleoside diphosphate kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,199,1770AG100.0% 213.5 / NA 66intergenic (‑195/+45)U712_11015/U712_11020Chemotaxis protein methyltransferase/Nucleoside diphosphate kinase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (32/34);  total (32/34)

AATTGTATTGTTTCAATAAAAAAATCAGCTTTGCAGCTGATTTTAGATCGTTAGAAAAGGCAGGAGTCTGGTACACCCTGCCAATAAACGCTTTATTCACTTTAATGTAAACCTTTACAAAAGAAAACGAAAACCGACGGCATTACTTGGTGCCGGCTCTGTTACTTATTTTCATTAACGATTAATAGATCCAGCCTGCCATGAGCTGTTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCGAG  >  CP006881/2199041‑2199311
                                                                                                                                        |                                                                                                                                      
atttgttttgttTAAATAAAAAAATCAGCTTTTCAGCTGATTTTAGTTAGTTGGGAAAGGCAGAGGTCTGATGCACTCTGCTATTGAACCCTTTATTAACTTTATTGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                                                                                                      <  3:345529/137‑1 (MQ=255)
aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                                                                                                      <  4:143227/139‑1 (MQ=255)
aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                                                                                                      <  7:355916/139‑1 (MQ=255)
aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                                                                                                      <  7:312777/139‑1 (MQ=255)
aaTTGTATTGTTTCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCg                                                                                                                                      <  3:155533/139‑1 (MQ=255)
            tCAATAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTatatgtt                                                                                                                          >  3:253771/1‑133 (MQ=255)
               aTAAAAAAATCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGcc                                                                                                                       >  3:380602/1‑139 (MQ=255)
                       aTCAGCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGt                                                                                                               <  7:114063/139‑1 (MQ=255)
                           gCTTTTCAGCTGATTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCt                                                                                                           <  4:380602/139‑1 (MQ=255)
                                   gCTGATTTTAGATCGTTGGGAAAGGCAGAGGGCTGACGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCa                                                                                                   <  4:202169/139‑1 (MQ=255)
                                     tGATTTTAGATCGTTGGTAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACACAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCa                                                                                                   <  6:259418/137‑1 (MQ=255)
                                       aTTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCaca                                                                                                 <  8:422858/137‑3 (MQ=255)
                                       aTTTTAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTAATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCaca                                                                                                 <  6:89655/137‑3 (MQ=255)
                                         tttAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCacaatg                                                                                              <  8:439667/138‑6 (MQ=255)
                                          ttAGATCGTTGGGAAAGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTAATTTCacaatga                                                                                             <  6:389816/138‑7 (MQ=255)
                                                  ttgggaaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGa                                                                                    >  7:418204/6‑138 (MQ=255)
                                                   tgggaaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTTTTTTCACAATGATTAATAGATc                                                                                  >  6:244142/5‑139 (MQ=255)
                                                   tgggaaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGAt                                                                                   <  7:114192/134‑1 (MQ=255)
                                                       aaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGc                                                                              <  7:282988/139‑1 (MQ=255)
                                                       aaaGGCAGAGGTCTGATGCACACTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGc                                                                              <  8:43816/139‑1 (MQ=255)
                                                            cagaggTCTGATGCACACTGCCATTCCACCCGTTATTCACTTTAATGTAATCGTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGc                                                                          >  3:220989/6‑138 (MQ=255)
                                                                         cacaCTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCtgat                                                            <  7:117858/139‑1 (MQ=255)
                                                                           cacTGCCATTCAACCCTTTATTAACTTTAATGTAAACATTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTTCCGGCTCTGTTGCTTAATTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCtgatat                                                          >  6:83082/3‑139 (MQ=255)
                                                                            acTGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCtgatat                                                          >  2:32073/2‑138 (MQ=255)
                                                                              tGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTatat                                                                                                                             <  8:185626/70‑4 (MQ=255)
                                                                              tGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTatat                                                                                                                             >  7:185626/1‑67 (MQ=255)
                                                                              tGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCt                                                                                                           <  3:54843/88‑1 (MQ=255)
                                                                              tGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCt                                                                                                           >  4:54843/1‑88 (MQ=255)
                                                                              tGCCATTCAACCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCtgatatga                                                        >  4:284380/1‑138 (MQ=255)
                                                                                ccattcaaCCCTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATAc                                                     >  4:425643/7‑139 (MQ=255)
                                                                                        cccTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAAttctt                                             <  1:410688/137‑1 (MQ=255)
                                                                                        cccTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAAttct                                              >  6:96631/3‑138 (MQ=255)
                                                                                        cccTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAAttct                                              >  1:133057/3‑138 (MQ=255)
                                                                                        cccTTTATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAAAGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAAttct                                              >  1:403848/3‑138 (MQ=255)
                                                                                           tttATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCAt                                          >  8:306002/1‑139 (MQ=255)
                                                                                           tttATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCAt                                          >  4:195859/1‑139 (MQ=255)
                                                                                           tttATTCACTTTAATGTAAACCTTTACAAAAAAGAACAAAAACCGGCGGGGTTATTTGTTGCCGGCTATGTTGCTTATTTTCACAATGATTAAAATATCCAGCCTGCCATAAGATGGTGATATGATACTATttcgtggg                                          >  1:391980/1‑134 (MQ=255)
                                                                                             tATTCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTAAATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCATCATTc                                        >  7:217595/1‑139 (MQ=255)
                                                                                                tCACTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTa                                     <  2:403848/139‑1 (MQ=255)
                                                                                                  aCTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTa                                     >  8:187359/1‑137 (MQ=255)
                                                                                                   cTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCacaa                                                                                                <  3:12152/78‑4 (MQ=255)
                                                                                                   cTTTAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCacaa                                                                                                >  4:12152/1‑75 (MQ=255)
                                                                                                    tttAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTTCTTATTTTCACAATGTTTAATAGATACAGCCTGCCCTAAGCTGCTGATATGATACTAATTCTTGATTCTTaaat                                  >  1:214285/1‑137 (MQ=255)
                                                                                                    tttAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGc                                                                              <  3:48673/94‑1 (MQ=255)
                                                                                                    tttAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGc                                                                              >  4:48673/1‑94 (MQ=255)
                                                                                                    tttAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTAACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATTTGATACTAATTCTTCATTCTTAAAg                                  >  6:48994/1‑138 (MQ=255)
                                                                                                      tAATGTAAACCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGa                                 <  1:32073/137‑1 (MQ=255)
                                                                                                              aCCTTTACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTaa                        >  5:362690/1‑138 (MQ=255)
                                                                                                              aCCTTTACAAAACAAAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTaa                        >  6:413220/1‑138 (MQ=255)
                                                                                                                  ttACAAAACAGAACAAAAACCGGCGGCGTTATATGTTTCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTATTCATTCTTAAAGAAAATGTTAATCTcg                   >  7:158587/1‑139 (MQ=255)
                                                                                                                   tACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTACTAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAAtctc                    <  6:348082/137‑1 (MQ=255)
                                                                                                                   tACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAAtctc                    <  5:96631/137‑1 (MQ=255)
                                                                                                                   tACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAAtctc                    <  6:363057/137‑1 (MQ=255)
                                                                                                                   tACAAAACAGAACAAAAACCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTcgc                  >  5:372199/1‑139 (MQ=255)
                                                                                                                         acagaacaaaaacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTg            <  2:133057/135‑1 (MQ=255)
                                                                                                                          cagaacaaaaacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGc           >  8:332817/4‑139 (MQ=255)
                                                                                                                             aacaaaaacAGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTTCCATAAGCTGCTGATAAGATACTAATTCTTCATTCTTTAAGAAAATGTTAATCTCGCGTTCTGCACt        >  5:261444/1‑139 (MQ=255)
                                                                                                                                  aaacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGaa                                >  1:125442/1‑110 (MQ=255)
                                                                                                                                  aaacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGaa                                <  2:125442/110‑1 (MQ=255)
                                                                                                                                  aaacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGaa                                <  6:439043/110‑1 (MQ=255)
                                                                                                                                  aaacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGaa                                >  5:439043/1‑110 (MQ=255)
                                                                                                                                   aacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCgag  <  7:332817/139‑1 (MQ=255)
                                                                                                                                   aacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCgag  <  3:425643/139‑1 (MQ=255)
                                                                                                                                   aacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCgag  <  6:362690/139‑1 (MQ=255)
                                                                                                                                   aacCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCgag  <  5:413220/139‑1 (MQ=255)
                                                                                                                                    acCGGCGGCGTTATATGTTGCCGGCTCTGTTGCTTATTTTCACAATGATTAATAGATCCAGCCTGCCATAAGCTGCTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCga   >  5:150241/1‑137 (MQ=255)
                                                                                                                                        |                                                                                                                                      
AATTGTATTGTTTCAATAAAAAAATCAGCTTTGCAGCTGATTTTAGATCGTTAGAAAAGGCAGGAGTCTGGTACACCCTGCCAATAAACGCTTTATTCACTTTAATGTAAACCTTTACAAAAGAAAACGAAAACCGACGGCATTACTTGGTGCCGGCTCTGTTACTTATTTTCATTAACGATTAATAGATCCAGCCTGCCATGAGCTGTTGATATGATACTAATTCTTCATTCTTAAAGAAAATGTTAATCTCGCGTTCTGCACTTTCGAG  >  CP006881/2199041‑2199311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: