Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,199,976	G→A	S258S (AGC→AGT)	U712_11025 ←	Heptaprenyl diphosphate synthase component 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,199,976	0	G	A	100.0%	292.8 / NA	94	S258S (AGC→AGT)	U712_11025	Heptaprenyl diphosphate synthase component 2
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (51/43);  total (51/43)

CACGCCCTCTCGGAAGCGTGTTTAATTTCTCGAAAGCTTTCTGCAAATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCCGTTTTTTTGATTTCCTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCGCTGTTAATCAATTTAAGCTGATTCTTTAATGCTGGATTTTCCAGAGCATACAGCACTGGCAATGTGACATTCCCTTGAAGCAAATCTCCTCCAACGGGTTTGCCCAGCTCTTCTTCAGTTGAAGTAAAATCAAGG  >  CP006881/2199840‑2200111                                                                                                                                         |                                                                                                                                        cgcGCCCTCGAGGAAGCGTGTTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACt                                                                                                                                       >  1:217854/3‑139 (MQ=255)       ctcgaggAAGCGTGTTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAAt                                                                                                                                 <  2:217854/134‑1 (MQ=255)       ctcgaggAAGCGTGTTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAAt                                                                                                                                 >  8:98708/6‑139 (MQ=255)                gCGTGTTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCCTCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAg                                                                                                                        >  6:417314/1‑139 (MQ=255)                 cGTGTTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGc                                                                                                                       >  4:252744/1‑139 (MQ=255)                 cGTGTTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGc                                                                                                                       <  2:430355/139‑1 (MQ=255)                  gtgtTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATTCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCt                                                                                                                      >  2:187836/1‑139 (MQ=255)                  gtgtTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCt                                                                                                                      >  8:375815/1‑139 (MQ=255)                  gtgtTTAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCt                                                                                                                      >  8:203949/1‑139 (MQ=255)                     tttAATTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTATTCAATGATTTGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTggt                                                                                                                   >  5:134426/1‑137 (MQ=255)                         aTTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTtttt                                                                                                               <  3:252744/139‑1 (MQ=255)                         aTTTCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTtttt                                                                                                               <  3:174640/139‑1 (MQ=255)                          tttCTGAAAAGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTtttt                                                                                                               >  2:192796/1‑138 (MQ=255)                             ctgaaaaGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAAt                                                                                                           >  5:439299/5‑139 (MQ=255)                               gaaaaGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATg                                                                                                          >  4:403353/3‑138 (MQ=255)                                aaaaGCTTTCTTCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATg                                                                                                          <  1:280051/136‑1 (MQ=255)                                aaaaGCTTTCTGCAGATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATg                                                                                                          <  1:412999/136‑1 (MQ=255)                                            cagaTACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGAtttttc                                                                                               <  6:343119/133‑3 (MQ=255)                                            cagaTACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCa                                                                                              <  7:78519/134‑1 (MQ=255)                                            cagaTACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCa                                                                                              <  5:343727/134‑1 (MQ=255)                                            cagaTACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCa                                                                                              <  1:192796/134‑1 (MQ=255)                                                  cATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATa                                                                                       <  4:383247/138‑1 (MQ=255)                                                  cATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATa                                                                                       <  2:145080/138‑1 (MQ=255)                                                  cATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATa                                                                                       <  2:142140/138‑1 (MQ=255)                                                  cATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATAc                                                                                      <  1:128690/139‑1 (MQ=255)                                                  cATTTCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGGTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATa                                                                                       <  4:47136/138‑1 (MQ=255)                                                    tttCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGGTTTTTCAGGGCATACAg                                                                                    >  2:379948/1‑139 (MQ=255)                                                    tttCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAg                                                                                    <  2:157058/139‑1 (MQ=255)                                                      tCGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATCATTGGTTCAAGATGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCa                                                                                  >  4:331910/1‑139 (MQ=255)                                                       cGCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCa                                                                                  <  8:238334/138‑1 (MQ=255)                                                        gCTTACTGCCATAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACt                                                                                <  6:134426/139‑1 (MQ=255)                                                                   tAGATGCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGAc                                                                     >  6:89392/1‑139 (MQ=255)                                                                        gCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCagg                                                                                            <  3:177485/111‑2 (MQ=255)                                                                        gCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCagg                                                                                            >  4:177485/1‑110 (MQ=255)                                                                        gCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGtttc                                                                >  5:385388/1‑137 (MQ=255)                                                                        gCTTCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGtttc                                                                >  7:297587/1‑137 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCa                                                                                              <  1:130572/107‑1 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCa                                                                                              >  2:130572/1‑107 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCt                                                              >  7:258411/1‑139 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCt                                                              >  5:394626/1‑139 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCt                                                              >  7:296682/1‑139 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCt                                                              >  5:14962/1‑139 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCt                                                              >  3:246697/1‑139 (MQ=255)                                                                          ttCAATTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCt                                                              >  3:288071/1‑139 (MQ=255)                                                                          ttCAATTGCATCTG‑TTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCtt                                                             >  7:347879/1‑139 (MQ=255)                                                                             aaTTGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTg                                                            <  5:204576/138‑1 (MQ=255)                                                                               ttGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAg                                                         <  2:305207/139‑1 (MQ=255)                                                                               ttGCATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAg                                                         <  8:258411/139‑1 (MQ=255)                                                                                  cATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATa                                                                                       <  3:286618/106‑1 (MQ=255)                                                                                  cATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATa                                                                                       >  4:286618/1‑106 (MQ=255)                                                                                  cATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCa                                                       >  7:26388/1‑138 (MQ=255)                                                                                  cATCTGTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGAATACAGCACTGGCAATGTGACGGTTACTTGAAgaa                                                       >  6:423592/1‑136 (MQ=255)                                                                                    tctgTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAt                                                    >  2:4489/4‑139 (MQ=255)                                                                                       gTTTTTTTGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAtc                                                   >  4:133046/1‑137 (MQ=255)                                                                                        tttttttGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAtct                                                  <  4:24829/137‑1 (MQ=255)                                                                                        tttttttGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAtct                                                  <  3:133046/137‑1 (MQ=255)                                                                                        tttttttGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAt                                                    <  3:191945/135‑1 (MQ=255)                                                                                              tGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCtcctccta                                           <  4:246697/138‑3 (MQ=255)                                                                                              tGATTTCTTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCtcctccta                                           <  7:203949/138‑3 (MQ=255)                                                                                                   tcttCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGt                                      <  1:444138/135‑1 (MQ=255)                                                                                                          tGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAg                              <  6:14962/139‑1 (MQ=255)                                                                                                          tGATTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAg                              <  3:403353/139‑1 (MQ=255)                                                                                                            aTTGGTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGct                            <  6:417066/139‑1 (MQ=255)                                                                                                               ggTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATg                                                                                                          >  5:316926/1‑58 (MQ=38)                                                                                                               ggTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATg                                                                                                          <  6:316926/58‑1 (MQ=255)                                                                                                               ggTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCtctt                         >  1:62258/1‑139 (MQ=255)                                                                                                               ggTTCAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCtctt                         >  3:367693/1‑139 (MQ=255)                                                                                                                   cAAGCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCtcttcct                      <  6:385388/138‑3 (MQ=255)                                                                                                                      gCTGTTCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGt                  >  2:353502/1‑139 (MQ=255)                                                                                                                          ttCCTGCGTTGTCTCACTGTTACTCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTg                <  7:406804/137‑1 (MQ=255)                                                                                                                          ttCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTg                >  6:209922/1‑137 (MQ=255)                                                                                                                          ttCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTg                >  2:266748/1‑137 (MQ=255)                                                                                                                          ttCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTg                >  4:219085/1‑137 (MQ=255)                                                                                                                          ttCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTg                >  5:433446/1‑137 (MQ=255)                                                                                                                          ttCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGATTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTACCTCAGTTg                >  5:290352/1‑137 (MQ=255)                                                                                                                           tCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCCCTCGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAg             >  8:364522/1‑139 (MQ=255)                                                                                                                           tCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCtcctccta                                           <  7:386823/109‑3 (MQ=255)                                                                                                                           tCCTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCtcctccta                                           >  8:386823/1‑107 (MQ=255)                                                                                                                             cTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTa           <  1:4489/139‑1 (MQ=255)                                                                                                                             cTGCGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTa           <  8:297587/139‑1 (MQ=255)                                                                                                                                cGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTGAGGGCATACAGCACTGGCTATGTGACGTTTCCTTGAAGCATATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTaaa         <  3:331910/138‑1 (MQ=255)                                                                                                                                cGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTaaaa        >  6:38595/1‑139 (MQ=255)                                                                                                                                cGTTGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCACAGTTCAAGAaaaa        >  4:246539/1‑139 (MQ=255)                                                                                                                                  ttGTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAAt       >  1:99743/1‑138 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCATTGTGAGGTTTCGTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCGTCTGGTGCAGTAAAATCat    >  2:45142/1‑138 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAtctc                                                 >  8:225662/1‑94 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAAtctc                                                 <  7:225662/94‑1 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAATc      >  5:440489/1‑137 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAATc      >  1:349751/1‑137 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAATCaa    >  3:272535/1‑139 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAATCaa    >  3:273348/1‑139 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAATCa     <  1:266748/138‑1 (MQ=255)                                                                                                                                    gTCTCACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGATTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACACAGCTCTTACTCAGTTGAAGTAAAATc      >  7:254491/1‑137 (MQ=255)                                                                                                                                      ctcACTGTTAATCAATTTAAGCTGGTTTTTTAATGCAGGGTTTTTCAGGGCATACAGCACTGGCAATGTGACGTTTCCTTGAAGCAAATCTCCTCCTACGGGTTTACCCAGCTCTTCCTCAGTTGAAGTAAAATCAAga  <  1:379948/139‑2 (MQ=255)                                                                                                                                         |                                                                                                                                        CACGCCCTCTCGGAAGCGTGTTTAATTTCTCGAAAGCTTTCTGCAAATACATTTCGCTTACTGCCATAGATGCTTCAATTGCATCCGTTTTTTTGATTTCCTCAATGATTGGTTCAAGCTGTTCCTGCGTTGTCTCGCTGTTAATCAATTTAAGCTGATTCTTTAATGCTGGATTTTCCAGAGCATACAGCACTGGCAATGTGACATTCCCTTGAAGCAAATCTCCTCCAACGGGTTTGCCCAGCTCTTCTTCAGTTGAAGTAAAATCAAGG  >  CP006881/2199840‑2200111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑