Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 1,227,318 A→T N216K (AAT→AAA U712_06155 ← Uncharacterized protein yjcM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,227,3180AT97.0% 411.0 / ‑1.9 135N216K (AAT→AAAU712_06155Uncharacterized protein yjcM
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base T (58/72);  total (59/76)
Fisher's exact test for biased strand distribution p-value = 6.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 140 total aligned reads displayed.

CGTAACCACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATAATTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTATTACATTTAG  >  CP006881/1227182‑1227452
                                                                                                                                        |                                                                                                                                      
cGTAACCACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATAttt                                                                                                                                      >  3:59259/1‑139 (MQ=255)
cGTAACCACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATAATCATTTTTAACTTCTTGCTTATAttt                                                                                                                                      >  5:423752/1‑139 (MQ=255)
  tAACCACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATtttt                                                                                                                                    >  4:126856/1‑139 (MQ=255)
   aaCCACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTGTTGCTTATAtttttt                                                                                                                                   >  4:41450/1‑139 (MQ=255)
     ccACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTa                                                                                                                                 <  2:184652/139‑1 (MQ=255)
          atatCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAAt                                                                                                                            >  5:353900/1‑139 (MQ=255)
          atatCCTTTAACAGATGTTGCAGACACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATAATCATTATACACATCTTGATTATATTTTATTAAAAAt                                                                                                                            >  8:234311/1‑139 (MQ=255)
               cTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATc                                                                                                                       <  7:397/139‑1 (MQ=255)
                tttAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTTTCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATc                                                                                                                       >  3:365300/1‑138 (MQ=255)
                tttAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATc                                                                                                                       >  6:87708/1‑138 (MQ=255)
                  tAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTaa                                                                                                                    >  8:310065/1‑139 (MQ=255)
                   aaCAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCTTCTAAt                                                                                                                   >  5:219302/1‑139 (MQ=255)
                   aaCAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAAt                                                                                                                   >  5:137784/1‑139 (MQ=255)
                   aaCAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAAt                                                                                                                   >  6:12984/1‑139 (MQ=255)
                        aTGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTaa                                                                                                               >  3:41543/1‑138 (MQ=255)
                        aTGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATAATTTTTTAAAAATTCATCTAATTTaa                                                                                                               >  7:392718/1‑138 (MQ=255)
                        aTGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGATCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTAACTTATTACTTATATTTTTTTAAAAATTCATCTAATTTaa                                                                                                               >  4:211346/1‑138 (MQ=255)
                          gTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACAt                                                                                                            >  4:119335/1‑139 (MQ=255)
                          gTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATAATTTTTCAATTATTCATTAAATTTTTTTAAAAATACAAATAATTTaaaa                                                                                                             >  6:360195/1‑136 (MQ=255)
                              cAGTCACAGTTAGTTGATTAGAGTTATCAGGATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCg                                                                                                         <  7:234311/138‑1 (MQ=255)
                              cAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCg                                                                                                         <  4:395339/138‑1 (MQ=255)
                              cAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCg                                                                                                         <  8:376549/138‑1 (MQ=255)
                                  cacaGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCgaa                                                                                                       >  5:339865/1‑136 (MQ=255)
                                  cacaGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCgaa                                                                                                       <  6:339865/136‑1 (MQ=255)
                                  cacaGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCgaa                                                                                                       >  3:125989/1‑136 (MQ=255)
                                   acaGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCgaagaa                                                                                                    >  6:326089/1‑138 (MQ=255)
                                           ttGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTtca                                                                                           >  3:36213/1‑138 (MQ=255)
                                             gATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTtcat                                                                                          <  7:299422/138‑1 (MQ=255)
                                              aTTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTtcatca                                                                                        >  4:2521/1‑139 (MQ=255)
                                               ttAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTcatcat                                                                                       >  4:152318/1‑139 (MQ=255)
                                               ttAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTcatcat                                                                                       >  6:84004/1‑139 (MQ=255)
                                               ttAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTcatcat                                                                                       >  2:70011/1‑139 (MQ=255)
                                               ttAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTcatcat                                                                                       >  5:84216/1‑139 (MQ=255)
                                                 agagTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCg                                                                                                         <  8:183690/119‑1 (MQ=255)
                                                 agagTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCg                                                                                                         >  7:183690/1‑119 (MQ=255)
                                                   agTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTc                                                                                   <  4:158965/139‑1 (MQ=255)
                                                    gTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCa                                                                                  <  6:412481/139‑1 (MQ=255)
                                                    gTTAGCAGCATTGAAGTTCATACTTACTGGTTTAACTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCa                                                                                  <  8:371085/139‑1 (MQ=255)
                                                    gTTAGCAGCATTGAAGTTCATACTTACTGGGTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCa                                                                                  <  6:84216/139‑1 (MQ=255)
                                                       atcatgaTTTAATTTCATACTTACTTGTTTATCTTCACTTTTCAATTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCata                                                                                <  5:360195/132‑1 (MQ=255)
                                                        gcagcaTTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATAtt                                                                              >  3:254292/1‑139 (MQ=255)
                                                           gcaTTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTa                                                                           <  5:2727/139‑1 (MQ=255)
                                                            caTTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAATTTCATCTAATTTAACATCCGAAGAATATTCTTCATCTTTTTCATTTTGTag                                                                          >  2:150512/1‑139 (MQ=255)
                                                            caTTGAAGTTCATACTTACTGGATTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATCCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTag                                                                          <  6:202135/139‑1 (MQ=255)
                                                                    ttCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTgaag                                                                  <  1:70011/139‑1 (MQ=255)
                                                                    ttCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTgaag                                                                  <  4:254292/139‑1 (MQ=255)
                                                                      cATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTgaag                                                                  >  3:160559/1‑137 (MQ=255)
                                                                      cATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTATTCATCATTTTCTTATTTTAGAGTTgaag                                                                  >  7:22648/1‑137 (MQ=255)
                                                                      cATACTTACTGGTTTATCTTCACTTTTCACTTATTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTtca                                                                                           <  7:206213/112‑1 (MQ=255)
                                                                          cttactGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTgaagaagaa                                                             <  4:411668/138‑1 (MQ=255)
                                                                          cttactGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTgaagaagaa                                                             <  3:2521/138‑1 (MQ=255)
                                                                          cttactGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATAATTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTgaagaagaa                                                             <  8:392718/138‑1 (MQ=255)
                                                                             actGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACAt                                                                                                            >  7:289682/1‑88 (MQ=255)
                                                                             actGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCgaa                                                                                                       <  8:220088/93‑1 (MQ=255)
                                                                             actGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAGGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAattat                                                         >  5:412815/1‑139 (MQ=255)
                                                                             actGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAattat                                                         >  2:383460/1‑139 (MQ=255)
                                                                             actGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAattat                                                         >  3:103984/1‑139 (MQ=255)
                                                                              ctGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTTAAGAAGAattatt                                                        >  4:238605/1‑139 (MQ=255)
                                                                              ctGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAattatt                                                        >  2:165815/1‑139 (MQ=255)
                                                                                 ggttATCTTCACTTTTCACTTCTTCTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTaa                                                     <  2:212426/136‑1 (MQ=255)
                                                                                 gTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTaa                                                     <  5:83391/139‑1 (MQ=255)
                                                                                 gTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTaa                                                     >  8:369299/1‑139 (MQ=255)
                                                                                 gTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTaa                                                     <  3:126856/139‑1 (MQ=255)
                                                                                 gTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTaa                                                     <  2:190924/139‑1 (MQ=255)
                                                                                 gTTTATCTTCACTTTTCACATCTTCTTTATCATCATTTTTCACTTATTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATTTTCTTCATCATTTTCATATTGTAGAGTTGACGAAGAATTATTTaa                                                     <  1:383850/139‑1 (MQ=255)
                                                                                  tttATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTaa                                                     <  3:229642/138‑1 (MQ=255)
                                                                                     aTCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATtgt                                                 >  8:278465/1‑139 (MQ=255)
                                                                                          cacttttcacttCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATtgtg                                                <  5:84004/135‑1 (MQ=255)
                                                                                           acttttcacttCTTCTTTATCATCATTTTTCACTTCTTGATTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGATGAAGAATTATTTAATTGTGTTACa                                           >  6:67489/1‑139 (MQ=255)
                                                                                               ttcacttCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTa                                       >  7:396081/1‑139 (MQ=255)
                                                                                                 cacttCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAg                                      <  3:182496/138‑1 (MQ=255)
                                                                                                 cacttCTTCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAg                                      <  1:219962/138‑1 (MQ=255)
                                                                                                 cacttCATCTTTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAg                                      <  2:214493/138‑1 (MQ=255)
                                                                                                       ttcttTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCt                                 >  1:294495/1‑137 (MQ=255)
                                                                                                         cttTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATGATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCtt                                <  3:42841/136‑1 (MQ=255)
                                                                                                         cttTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTag                              <  1:91312/138‑1 (MQ=255)
                                                                                                         cttTATCATCATTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTag                              <  4:62578/138‑1 (MQ=255)
                                                                                                         cttTATCATCATATTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAAATTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTag                              <  4:346544/138‑1 (MQ=255)
                                                                                                         atttATCATAATTTTTCAATTATTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTag                              <  5:124950/137‑1 (MQ=255)
                                                                                                              tcatcaTTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAgaagaa                         <  4:353549/138‑1 (MQ=255)
                                                                                                              tcatcaTTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAgaagaa                         <  6:314748/138‑1 (MQ=255)
                                                                                                              tcatcaTTTTTCACATCATGCTTATATTTTTTTAAAAAATCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTATAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAgaagaa                         <  4:443564/138‑1 (MQ=255)
                                                                                                                   atTTTTCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTc                   <  8:396847/139‑1 (MQ=255)
                                                                                                                    tttttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCa                  <  6:423752/139‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAGGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  6:412815/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  7:278465/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  1:383460/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  2:294495/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  3:208185/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  3:238605/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  4:103984/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  4:286783/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  7:369299/138‑1 (MQ=255)
                                                                                                                      tttCACTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGGTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCaa                 <  6:53113/138‑1 (MQ=255)
                                                                                                                          aCTTCTTGCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTa            <  1:170757/139‑1 (MQ=255)
                                                                                                                          aCTTCTTGCGTATAATTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTa            <  6:353900/139‑1 (MQ=255)
                                                                                                                           cttcttGCTTATATTTTTTTAAAAAATCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGGTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTAt           <  2:424720/139‑1 (MQ=255)
                                                                                                                                 gCTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTATTACa       <  5:12984/137‑1 (MQ=255)
                                                                                                                                  cTTATATTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTATTACAttt    <  3:292804/139‑1 (MQ=255)
                                                                                                                                     atatTTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTATTACATTTAg  <  8:32979/138‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CGTAACCACTATATCCTTTAACAGATGTTGCAGTCACAGTTAGTTGATTAGAGTTAGCAGCATTGAAGTTCATACTTACTGGTTTATCTTCACTTTTCACTTCTTCTTTATCATCATTTTTCACTTCTTGCTTATAATTTTTTAAAAATTCATCTAATTTAACATCCGAAGAATATTCTTCATCATTTTCATATTGTAGAGTTGAAGAAGAATTATTTAATTGTGTTACATTTAGTTGCTTAGAAGAATTACTCAATGGTATTACATTTAG  >  CP006881/1227182‑1227452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: