| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,177,339 | T→C | E219E (GAA→GAG) | U712_10895 ← | Dihydrodipicolinate reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,177,339 | 0 | T | C | 98.5% | 218.2 / NA | 68 | E219E (GAA→GAG) | U712_10895 | Dihydrodipicolinate reductase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (40/27); minor base A (1/0); total (41/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTTCTAATCCGTACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACACCTGACATGAAAGAAGCGCGGTTATAGGAATCGTGGCGGATCTGAAGCGTTTGGCCATCCATGCCGAACATGACTTCCTGATGTGCGATCAATCCCGGAAGACGGACACTGTGCAAGCGGATACCGTTTTGTTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGGTGTCCTTGCTGCTTTTCTTGACGGACTTCTGAAAT > CP006881/2177205‑2177473 | ttttCTAAACCATACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGAcctcct > 6:142110/1‑139 (MQ=255) tCTAAACCATACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGAt > 8:86675/1‑139 (MQ=255) tAAACCATACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGAtgc > 1:40509/1‑138 (MQ=255) aaccatACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATgcgc > 7:66984/6‑139 (MQ=255) tACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt > 7:289246/1‑137 (MQ=255) tACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt > 7:308465/1‑137 (MQ=255) tACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt > 5:197438/1‑137 (MQ=255) tACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCa > 8:16971/1‑139 (MQ=255) tACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGACTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGACGCGATTGGCCATCCATGCCGAACATGACCTACTCATGCTCGAt > 1:19167/1‑137 (MQ=255) acacAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCag > 1:401730/1‑138 (MQ=255) cacaAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAGCagt > 1:153494/1‑137 (MQ=255) aaGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTccc > 8:10046/1‑139 (MQ=255) gCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCgg < 2:122967/139‑1 (MQ=255) gCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCgg < 3:295663/139‑1 (MQ=255) gCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCg > 3:135951/1‑138 (MQ=255) cTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt > 3:287377/1‑129 (MQ=255) cTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt < 4:287377/129‑1 (MQ=255) gATCAATCTTCATGACTTGTTCGACTGAAAGTTTAACGACTCACATTAAAGAAGCAATGTTATAAGAATCATTCCTTATCTGAAGCGTTAGTCCATCCATGCCGAACATGACCTACTGATGCGCGATCAGTcccag > 7:271170/1‑134 (MQ=255) aTCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGa > 6:114418/1‑139 (MQ=255) aTCAATCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGa > 6:423356/1‑139 (MQ=255) aTCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGa < 1:185118/139‑1 (MQ=255) aTCTTCATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGa < 8:289246/139‑1 (MQ=255) cATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGTGCGATCAGTCCCGGAAGACGGacg < 7:334292/136‑2 (MQ=255) cATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGacg < 2:132632/136‑2 (MQ=255) cATGACTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGacg < 5:320145/136‑2 (MQ=255) aCTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCa < 7:16971/139‑1 (MQ=255) cTTGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCaa < 8:66984/139‑1 (MQ=255) ttGTTCGACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAg > 4:433712/1‑139 (MQ=255) gACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATa < 2:401730/139‑1 (MQ=255) gACTGACAGTTTAACGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATa < 7:181233/139‑1 (MQ=255) aaCGCCTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTc < 5:150222/138‑1 (MQ=255) acgccTGACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCg < 5:423356/136‑1 (MQ=255) gACATGAAAGACGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGAGCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGctcctc > 8:125315/1‑139 (MQ=255) gACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGctcctc > 8:30206/1‑139 (MQ=255) gACATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGCCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGACCCGGAAGACGGACGCTGAGCAAGCTAATACCGATTTGCTCCGctcct > 2:260574/1‑138 (MQ=255) aCATGAAAGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCctct < 6:197438/139‑1 (MQ=255) aaaGAAGCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCT‑CTCTTGCTcc > 4:86123/1‑139 (MQ=255) agaagCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGAGGCTGTGCAAGCgaa > 8:282402/1‑108 (MQ=255) agaagCACGGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCgaa < 7:282402/110‑3 (MQ=255) cacgGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCgg > 6:414989/3‑82 (MQ=255) cacgGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCgg < 5:414989/80‑1 (MQ=255) cacgGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATa < 5:79250/105‑1 (MQ=255) cacgGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATa > 6:79250/3‑107 (MQ=255) cacgGTTATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCGTGCGCCTGGgag > 5:240615/3‑139 (MQ=255) ttATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt < 7:102565/68‑1 (MQ=255) ttATAAGAATCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGAt > 8:102565/1‑68 (MQ=255) aTCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCa > 6:385112/1‑139 (MQ=255) aTCATGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCa > 8:404346/1‑139 (MQ=255) tcatGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCAt < 8:308465/136‑1 (MQ=255) tcatGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCAt < 3:433712/136‑1 (MQ=255) catGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATc > 8:293415/3‑139 (MQ=255) catGGCGTATCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATCCGCGATCAGTCCCGGAAGACGGACGCAGTGCAAGCGAATACCGTTATGCTCCGCTCCTCTTGCGCCTGGGAGAAGTTCTTTTTCATc > 5:278583/3‑139 (MQ=255) catGGCGTATCTGAAGCGTTTGGCCATCAATGACGAACATTCCATCCTCATGCGCGATCAGACCCGGAAGACGCACGCTGTGCAAGCGCAAACCGTTTTGCTCCGCTCCTCTGGCTCCTCGGAGAATTTCTATTTAATc > 2:161185/3‑139 (MQ=255) tCTGAAGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTcc > 6:321801/1‑139 (MQ=255) aaGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCTtgc > 5:406547/1‑139 (MQ=255) aaGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCTtg < 5:114418/138‑1 (MQ=255) aGCGTTTGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCATCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCTtgct > 7:198326/1‑139 (MQ=255) tGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATc > 5:56364/1‑39 (MQ=255) tGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATc < 6:56364/39‑1 (MQ=255) tGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCt > 8:53483/1‑129 (MQ=255) tGGCCATCCATGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCt < 7:53483/129‑1 (MQ=255) tccatGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGc > 8:435926/1‑61 (MQ=255) tccatGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGc < 7:435926/61‑1 (MQ=255) ccatGCCGAACATGACCTCCGGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCTTGCTGCTTTTCTTTACg < 8:53019/139‑1 (MQ=255) catGCCGAACATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCTTGCTGCTTTTCTTTACg > 3:25513/1‑138 (MQ=255) cATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAAtt < 2:399352/91‑1 (MQ=255) cATGACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAAtt > 1:399352/1‑91 (MQ=255) gACCTCCTGATGCGCGCTCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTCCTTGCTGCGTTTCTGTACGGACTTCTGAAAt > 5:171362/1‑138 (MQ=255) gACCTCCTGATGCGCGATCAGTCCCGGAAGACGGACGCTGTGCAAGCGAATACCGTTTTGCTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGATGTACTTGCTGCTTTTCTTTACGGACTTCTTAAAt > 2:161686/1‑138 (MQ=255) | TTTTCTAATCCGTACACAAGCTGATCAATCTTCATGACTTGTTCGACTGACAGTTTAACACCTGACATGAAAGAAGCGCGGTTATAGGAATCGTGGCGGATCTGAAGCGTTTGGCCATCCATGCCGAACATGACTTCCTGATGTGCGATCAATCCCGGAAGACGGACACTGTGCAAGCGGATACCGTTTTGTTCCGCTCCTCTTGCTCCTGGGAGAATTTCTTTTTCATCCGGGTGTCCTTGCTGCTTTTCTTGACGGACTTCTGAAAT > CP006881/2177205‑2177473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |