Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,177,923	T→C	T25A (ACA→GCA)	U712_10895 ←	Dihydrodipicolinate reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,177,923	0	T	C	100.0%	296.7 / NA	96	T25A (ACA→GCA)	U712_10895	Dihydrodipicolinate reductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (55/41);  total (55/41)

AGCATGCACGGATATCTGTGTAAATGAGAGCATCTGACTCAACAGACATCACATCAGATAATTTTTGCTGGTCGTATGTATGGTCTATGGCCCCGACAAGGTCAAAATGAGGTGTTCGTTCTGTCAATTTAACAGCTTCTTGCCCCATTCTTCCACGCGGTCCTGCAATGACTACTTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTATCTCTAGTATT  >  CP006881/2177800‑2178054                                                                                                                            |                                                                                                                                    aacaggCATGGATATCTGTGTAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGcttc                                                                                                                      <  5:271182/134‑1 (MQ=255) aacaggCATGGATATCTGTGTAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGcttc                                                                                                                      >  4:177516/6‑139 (MQ=255)         tggATATCTGTGTAAATGAAAGCAGCTGACTCAACAGGCATCACATCAGATAAATTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCa                                                                                                              <  7:276627/138‑1 (MQ=255)                cTGTGTAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCAttcttc                                                                                                        >  1:418116/1‑138 (MQ=255)                cTGTGTAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTcc                                                                                                       >  3:414870/1‑139 (MQ=255)                cTGTGTAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAAGTTAACAGCTTCCTGCCCCATTCTTcc                                                                                                       >  1:404338/1‑139 (MQ=255)                 tgtgTAAATGAAAGCATCTGACTCCACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGGTCGTTCTGCCAATTTACCAGCTTCCTGCCCCAGTCTTCCa                                                                                                      >  3:200293/1‑139 (MQ=255)                   tgtAAATGAAAGGATCTGACTCAAGAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCGATTCTTCCAcg                                                                                                    <  3:379404/139‑1 (MQ=255)                     tAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCAcgcg                                                                                                  >  8:342011/1‑139 (MQ=255)                     tAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCAcgcg                                                                                                  >  5:432754/1‑139 (MQ=255)                     tAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCAcgcg                                                                                                  >  7:333016/1‑139 (MQ=255)                     tAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCAcg                                                                                                    <  1:289148/137‑1 (MQ=255)                     tAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCAcg                                                                                                    >  2:289148/1‑137 (MQ=255)                     tAAATGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGACCCATTCTTCCAcgcg                                                                                                  >  1:82038/1‑139 (MQ=255)                        aTGAAAGCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTc                                                                                               >  4:373210/1‑139 (MQ=255)                          gaaagCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTccc                                                                                             >  3:187023/4‑138 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGc                                                                                           >  7:237243/1‑138 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGc                                                                                           >  3:300553/1‑138 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGc                                                                                           >  5:300217/1‑138 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCa                                                                                          <  1:44729/139‑1 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCa                                                                                          <  2:33208/139‑1 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCa                                                                                          <  7:127798/139‑1 (MQ=255)                             agCATCTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTACCACGCGGTCCCGc                                                                                           >  4:247494/1‑138 (MQ=255)                                  cTGACTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTTCCCCATTATTCCACGCGGTCCCGCAATGa                                                                                      >  7:174684/1‑138 (MQ=255)                                     aCTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGac                                                                                     <  2:418116/136‑1 (MQ=255)                                     aCTCAACAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGac                                                                                     <  7:43953/136‑1 (MQ=255)                                         aaCAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAAttt                                                                               >  1:121590/1‑138 (MQ=255)                                          aCAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTaa                                                                             >  2:19048/1‑139 (MQ=255)                                          aCAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTaa                                                                             >  8:293168/1‑139 (MQ=255)                                          aCAGGCATCACATCAGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTaa                                                                             >  8:67899/1‑139 (MQ=255)                                               catcacatcaGATAATTTTTGCTGATCGTATGTATGGTCTATTGCCCCTACATGGTCAATATGTGGTGTTCGTTCTTCCAAATTAACAGATTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGGCTAATTTAATTGtt                                                                        >  6:408696/1‑139 (MQ=255)                                                 tcacatcaGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGACCCATACTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTc                                                                      >  6:406223/1‑139 (MQ=255)                                                  cacatcaGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCg                                                                     >  7:401249/1‑139 (MQ=255)                                                      tcaGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTg                                                                 <  1:19048/139‑1 (MQ=255)                                                      tcaGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTg                                                                 <  2:121590/139‑1 (MQ=255)                                                      tcaGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTg                                                                 <  4:414870/139‑1 (MQ=255)                                                      tcaGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGGCAAAATGTGGGGTTCGGTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTg                                                                 <  8:284461/139‑1 (MQ=255)                                                       caGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGa                                                                >  3:98124/1‑139 (MQ=255)                                                        aGATAATTTTTGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGa                                                                <  6:432754/138‑1 (MQ=255)                                                              tttttGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTg                                                         <  3:373210/139‑1 (MQ=255)                                                                 ttGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       <  8:401249/138‑1 (MQ=255)                                                                 ttGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       <  8:174684/138‑1 (MQ=255)                                                                 ttGCTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       <  2:238482/138‑1 (MQ=255)                                                                    cTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAtctc                                                    <  8:424879/138‑1 (MQ=255)                                                                    cTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAtctc                                                    <  7:193510/138‑1 (MQ=255)                                                                    cTGATCGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAtctc                                                    <  7:315128/138‑1 (MQ=255)                                                                         cGTATGTATGGTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTAc                                              >  5:26032/1‑139 (MQ=255)                                                                                   gTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTTACATCTTGATATCCTCAACTTTCcttttt                                    >  6:337313/1‑139 (MQ=255)                                                                                   gTCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTAGTTTGACATCTTGATCTCCTCTACTTTCcttct                                     >  1:39436/1‑138 (MQ=255)                                                                                    tCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGCCTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCcttcttc                                   >  8:165234/1‑139 (MQ=255)                                                                                    tCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGGTCTCCTCTACTTTCcttcttc                                   <  8:381708/139‑1 (MQ=255)                                                                                    tCTATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACCCGGTCCCGCAATGACTAATTTAAATGTTTCGTTTGACATCTTGATATCCGCTACTTTCcttcttc                                   >  4:25337/1‑139 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGCTCTCCTCTACTTTCcttcttctt                                 >  2:291478/1‑139 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       <  7:255438/117‑1 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       >  8:255438/1‑117 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATGTCCTCTACTTTCcttcttgtt                                 >  1:335530/1‑139 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCcttcttctt                                 >  3:43588/1‑139 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCcttcttctt                                 >  6:343450/1‑139 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCcttcttctt                                 >  5:95763/1‑139 (MQ=255)                                                                                      tATGGCCCCTACAAGGTCAAAATGAGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGACCCAATCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTAACTCTCCTCTACTTTCctgcttctt                                 >  4:87839/1‑139 (MQ=255)                                                                                         ggCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTc                              >  5:431470/1‑139 (MQ=255)                                                                                          gCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTc                              <  7:67899/138‑1 (MQ=255)                                                                                          gCCCCTACAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTc                              <  7:293168/138‑1 (MQ=255)                                                                                            cccTACAAGGTCAAACTGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTgg                           <  2:81698/139‑1 (MQ=255)                                                                                             cctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGCCTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGt                          >  4:412384/4‑139 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCCCGCGGTCCCGCAATGCCTAATTTAATTGTTTCGTTTGACATCTTGATCGCCGCGACGTTCCTTCTTCTTTTCTGGTc                         >  6:359008/3‑139 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGac                                                                                     <  5:14661/77‑1 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGac                                                                                     >  6:14661/3‑79 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTg                                                                 <  7:209481/97‑1 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTg                                                                 >  8:209481/3‑99 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTg                                                         >  4:94423/3‑107 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTg                                                         <  3:94423/105‑1 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTc                         <  5:144048/137‑1 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTc                         >  8:134220/3‑139 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTc                         >  8:127956/3‑139 (MQ=255)                                                                                              ctaCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACAAATTTAATTGTTTGGTTTGACATCTTGAACTCCTCTACTTTCCTTCTTCTTTTGTGGTc                         >  7:155487/3‑139 (MQ=255)                                                                                               taCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       >  6:243881/2‑108 (MQ=255)                                                                                               taCAAGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGAt                                                       <  5:243881/107‑1 (MQ=255)                                                                                                  aaGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCGAGc                     <  4:187023/139‑1 (MQ=255)                                                                                                  aaGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGc                     <  5:152576/139‑1 (MQ=255)                                                                                                  aaGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGc                     <  8:333016/139‑1 (MQ=255)                                                                                                   acgTCAAAATGTGGTGTTCGTTCTGCCAATTTAACATCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCg                    <  3:233012/137‑1 (MQ=255)                                                                                                   aGGTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCg                    <  8:199588/139‑1 (MQ=255)                                                                                                     gTCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCCTTCTTCCACGCGGTCCCGCCATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTGTTCTGGTCGCGCGAt                  >  5:287240/1‑139 (MQ=255)                                                                                                      tCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTg                                                         <  5:374998/99‑1 (MQ=255)                                                                                                      tCAAAATGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCACATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTg                                                         >  6:374998/1‑99 (MQ=255)                                                                                                           aTGTGGTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTTACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTa             >  4:58136/1‑138 (MQ=255)                                                                                                           aTGTGGTGTTCGGTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTAt            <  6:300217/139‑1 (MQ=255)                                                                                                              tggTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTAtctc         <  2:8820/138‑1 (MQ=255)                                                                                                              tggTGTTCGTTCTGCCAATTTAACAGCTTCCTGCCACATTCTTCCACGCGGTCCCTCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTAtctc         <  5:408696/138‑1 (MQ=255)                                                                                                                gtgtTCGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTATctctt       >  7:46380/1‑138 (MQ=255)                                                                                                                gtgtTAGTTCTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACATTCCTTATTATTTTCTTGTCCAGCGATCTTTATgtctt       >  6:384354/1‑138 (MQ=255)                                                                                                                   ttcgttcTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTATCTCTTGTa    <  5:337313/139‑1 (MQ=255)                                                                                                                   ttcgttcTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTATCTCTTGTa    >  7:260015/1‑139 (MQ=255)                                                                                                                   ttcgttcTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGAATAATTTAATTGTTTCGTTTGACATCTTGATCTAATCTACTTTCCTTCTTCTTTTCTGGTACAGCGATCATAATATCTTGTa    >  6:132201/1‑139 (MQ=255)                                                                                                                      gttcTGCCAATTTAACAGCTTCCTGCCCCATTCTTCCACGCGGTCCCGCAATGACTAATTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTATCTCTTGTAtt  >  6:319539/1‑138 (MQ=255)                                                                                                                            |                                                                                                                                    AGCATGCACGGATATCTGTGTAAATGAGAGCATCTGACTCAACAGACATCACATCAGATAATTTTTGCTGGTCGTATGTATGGTCTATGGCCCCGACAAGGTCAAAATGAGGTGTTCGTTCTGTCAATTTAACAGCTTCTTGCCCCATTCTTCCACGCGGTCCTGCAATGACTACTTTAATTGTTTCGTTTGACATCTTGATCTCCTCTACTTTCCTTCTTCTTTTCTGGTCCAGCGATCTTTATCTCTAGTATT  >  CP006881/2177800‑2178054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑