Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,183,979	T→C	V48V (GTA→GTG)	U712_10940 ←	Hypothetical Protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,183,979	0	T	C	100.0%	319.5 / NA	97	V48V (GTA→GTG)	U712_10940	Hypothetical Protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (60/37);  total (60/37)

TTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAACTCTGCCTGCTCTACAAAATGAACCTTTTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAG  >  CP006881/2183848‑2184112                                                                                                                                    |                                                                                                                                      tttaATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAAt                                                                                                                                >  2:390918/1‑139 (MQ=255)    aaTCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGaa                                                                                                                             >  5:317910/1‑139 (MQ=255)      tttAATATCTTTAATAGTTTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCTGAACGGAACTTCTTCAACACAATGTGTTGATATTATAATGCCTCTCGGGAAATATTCAGGCTGCTCCACAAAATGAAcc                                                                                                                           <  4:86926/137‑1 (MQ=255)        tAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCtt                                                                                                                         <  4:182160/139‑1 (MQ=255)          atatCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAAcc                                                                                                                           <  8:413564/135‑1 (MQ=255)               aTGAAAAGATTTTTCCGCGTCGGTAGTCATGCCATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  4:143914/1‑138 (MQ=255)               aTGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  8:419869/1‑138 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  1:108693/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  3:134436/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  3:23043/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  3:267559/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  3:92891/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  6:261061/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  1:304178/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  7:48625/1‑137 (MQ=255)                tGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCAt                                                                                                                   >  1:122102/1‑137 (MQ=255)                           ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  5:261061/138‑1 (MQ=255)                           ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  2:122102/138‑1 (MQ=255)                           ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  6:399698/138‑1 (MQ=255)                           ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  4:134436/138‑1 (MQ=255)                           ttCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  3:179038/138‑1 (MQ=255)                           ttCCGCGGCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  4:268810/138‑1 (MQ=255)                            tCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGc                                                                                                     >  7:337152/1‑139 (MQ=255)                                    ggTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAag                                                                                             <  1:417433/139‑1 (MQ=255)                                    ggTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAag                                                                                             <  5:166234/139‑1 (MQ=255)                                             gACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCat                                                                                     >  8:438555/1‑137 (MQ=255)                                                   ctctTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCa                                                                               >  1:354375/1‑138 (MQ=255)                                                   ctctTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGATCATTAAGTAGTTCAAGATCaaa                                                                              >  4:317456/1‑139 (MQ=255)                                                     ctTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCAAAAc                                                                            >  6:257317/1‑139 (MQ=255)                                                       ttATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                                  >  3:302843/1‑115 (MQ=255)                                                       ttATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                                  <  4:302843/115‑1 (MQ=255)                                                         ataGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCa                                                                         <  3:54471/138‑1 (MQ=255)                                                              aCCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCCCAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCg                                                                   >  3:367343/1‑139 (MQ=255)                                                               ccGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCgg                                                                  <  1:13059/139‑1 (MQ=255)                                                                cggaacggaaCTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGgc                                                                 >  1:195745/1‑139 (MQ=255)                                                                cggaacggaaCTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTAAAGATCCAAACGCACTCTCGgc                                                                 >  7:140772/1‑139 (MQ=255)                                                                cggaacggaaCTTCTTCAACACAATGTGTTGAAATTATAATGCCTCTCGCGCAAAATTCAGCCTGCTCCACAAAATGAACCTACTCCATGAGAGAATCATTCCTCATTAAGTAGTTCAATATACAAACGCAATCTCGgc                                                                 >  6:299587/1‑139 (MQ=255)                                                                  gaacggaacTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACTCACTCTCGgagc                                                               >  2:178889/1‑139 (MQ=255)                                                                  gaacgcaacTTCTACAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCACCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCACGgcgc                                                               >  6:389611/1‑139 (MQ=255)                                                                       gaacTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                                          <  2:354375/139‑1 (MQ=255)                                                                          cttcttCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACt                                                        >  1:146015/1‑138 (MQ=255)                                                                                  acacAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATgag                                                                                                                <  5:268785/74‑1 (MQ=255)                                                                                  acacAATGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATgag                                                                                                                >  6:268785/1‑74 (MQ=255)                                                                                      aaTGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATTGTTTa                                            >  4:198139/1‑138 (MQ=255)                                                                                      aaTGTGTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTa                                            >  2:319716/1‑138 (MQ=255)                                                                                        tgtgTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTaaa                                          >  6:397919/1‑138 (MQ=255)                                                                                        tgtgTTGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTaaa                                          >  8:347938/1‑138 (MQ=255)                                                                                             tGACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCaa                                    >  4:251881/1‑139 (MQ=255)                                                                                              gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  7:390952/71‑1 (MQ=255)                                                                                              gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       >  8:390952/1‑71 (MQ=255)                                                                                              gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTTTCGGCGCTTTAACTGATAATGGTTTAAAAACCAAc                                   >  7:159672/1‑139 (MQ=255)                                                                                              gACATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCaa                                    <  6:200510/138‑1 (MQ=255)                                                                                               aCATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACg                                  >  8:433753/1‑139 (MQ=255)                                                                                                cATTATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACg                                  >  2:141137/1‑138 (MQ=255)                                                                                                  ttATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGa                                >  8:154470/1‑138 (MQ=255)                                                                                                  ttATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGa                                >  6:204964/1‑138 (MQ=255)                                                                                                  ttATAATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGa                                >  3:166823/1‑138 (MQ=255)                                                                                                    ataATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATa                              >  3:233593/1‑138 (MQ=255)                                                                                                    ataATGCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATa                              >  1:345482/1‑138 (MQ=255)                                                                                                         gCCTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCt                        >  8:196412/1‑139 (MQ=255)                                                                                                          ccTCTCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCtt                       >  4:227047/1‑139 (MQ=255)                                                                                                           ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                                  >  8:65969/1‑63 (MQ=255)                                                                                                           ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                                  <  7:65969/63‑1 (MQ=255)                                                                                                           ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttt                      >  2:162465/1‑139 (MQ=255)                                                                                                           ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttt                      >  5:108019/1‑139 (MQ=255)                                                                                                           ctctCGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttt                      >  6:263906/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATg                                                                                                       <  3:196008/56‑1 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGTCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATAttttt                    >  7:440196/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCATGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt                    >  1:155259/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                                          >  2:104032/1‑101 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                                          <  1:104032/101‑1 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt                    >  2:145052/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt                    >  4:270372/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCttttt                    >  4:40822/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTCATAATGGTTTAAAAACCAACGGATAAAATCttttt                    >  6:192489/1‑139 (MQ=255)                                                                                                             ctcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGAAGTTCAAGAACCAACCGCACGCTCGGCGCTATAACAGATAAAGGTTTAAAAACCAACGCATAAAAtgaattt                    >  6:317930/1‑133 (MQ=255)                                                                                                             ctcGCGCAAAATTCAGCCTGCACCACAAAATGAACCTTCTCCATCACAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACCCACTCTCGGCGCTTTAACTGATAATGGTTAAAAAACCAACCGAAAAAATCtatat                    >  7:57834/1‑135 (MQ=255)                                                                                                              tcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCtttt                     <  3:143914/137‑1 (MQ=255)                                                                                                              tcGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCtttt                     <  7:419869/137‑1 (MQ=255)                                                                                                               cGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                                          >  6:72134/1‑99 (MQ=255)                                                                                                               cGGGCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTaa                                                          <  5:72134/99‑1 (MQ=255)                                                                                                                  gCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                                  <  5:224896/56‑1 (MQ=255)                                                                                                                  gCAAAATTCAGCCTGCTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCa                                                                                                  >  6:224896/1‑56 (MQ=255)                                                                                                                      aattcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGa           >  1:369519/7‑139 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  4:233593/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  7:154470/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  8:230509/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  2:304178/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  1:390918/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  3:120139/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  1:319716/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGAc          <  6:317910/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATAGAc          <  4:92891/134‑1 (MQ=255)                                                                                                                       attcagcctgcTCCACAAAATGAACATTCACCATGATAGAATCATTGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAAATGATAATGGTTTAATAACCTAGGGATAAAATCTTTTTTCTCATTGAc          <  5:299587/134‑1 (MQ=255)                                                                                                                          cagcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAg        <  8:337152/136‑1 (MQ=255)                                                                                                                            gcctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGaaa     >  5:224178/1‑139 (MQ=255)                                                                                                                              ctgcTCCACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACa   <  2:146015/139‑1 (MQ=255)                                                                                                                                 ctccACAAAATGAACCTTCTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAg  <  1:162465/137‑1 (MQ=255)                                                                                                                                    |                                                                                                                                      TTTAATCTAATATCATGAAAAGATTTTTCCGCGTCGGTAGTCATGACATTCTCTTTATAGAACCGGAACGGAACTTCTTCAACACAATGTGTTGACATTATAATGCCTCTCGGGCAAAACTCTGCCTGCTCTACAAAATGAACCTTTTCCATGAGAGAATCATGGCTCATTAAGTAGTTCAAGATCCAAACGCACTCTCGGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAG  >  CP006881/2183848‑2184112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑