Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,184,182	G→T	intergenic (‑60/+12)	U712_10940 ← / ← U712_10945	Hypothetical Protein/TPR repeat‑containing protein ypiA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,184,182	0	G	T	100.0%	303.2 / NA	96	intergenic (‑60/+12)	U712_10940/U712_10945	Hypothetical Protein/TPR repeat‑containing protein ypiA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (71/25);  total (71/25)

GGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTGAACATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTCTCTTCCAGCTCTTCATTGGCCCCGTCAATTTCAAGAACCTTTTTCAAAAGCGGAAGCGCTTCTTTCTGCAGGCCTTCTTCTAATA  >  CP006881/2184047‑2184315                                                                                                                                        |                                                                                                                                      ggCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATATTTTTTCTCATTTACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTaa                                                                                                                                     >  4:442939/1‑138 (MQ=255)         aaCTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGc                                                                                                                            >  7:318913/1‑139 (MQ=255)         aaCTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTACCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGc                                                                                                                            >  1:225401/1‑139 (MQ=255)                    gTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGaa                                                                                                                  >  5:11637/1‑138 (MQ=255)                       tAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAAt                                                                                                               >  6:115588/1‑138 (MQ=255)                        aaaaaCCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCCCATGAATGGTTAATATTCCTGCTTATCTAGAAAttt                                                                                                              >  5:327967/1‑138 (MQ=255)                        aaaaaCCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAAtt                                                                                                              >  6:144778/1‑138 (MQ=255)                              cAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTc                                                                                                       >  8:444010/1‑139 (MQ=255)                              cAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTc                                                                                                       >  5:327201/1‑139 (MQ=255)                               aaCGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTc                                                                                                       >  5:152538/1‑138 (MQ=255)                                        aaTCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCaa                                                                                              >  5:214159/1‑138 (MQ=255)                                              ttttCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATATTCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGtt                                                                                       >  7:248370/1‑138 (MQ=255)                                                     aTTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttca                                                                                 <  2:225401/138‑2 (MQ=255)                                                        gACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGc                                                                              <  8:318913/138‑1 (MQ=255)                                                        gACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGc                                                                              <  5:389611/138‑1 (MQ=255)                                                         aCAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGctc                                                                            <  5:115588/139‑1 (MQ=255)                                                         aCAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGctc                                                                            <  2:108693/139‑1 (MQ=255)                                                         aCAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGct                                                                             <  5:204964/138‑1 (MQ=255)                                                                   gggTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttc                                                                                  >  7:263222/1‑123 (MQ=255)                                                                   gggTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttc                                                                                  <  8:263222/123‑1 (MQ=255)                                                                   gggTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGct                                                                  >  4:156419/1‑138 (MQ=255)                                                                   gggTCTGCATGTAATTCCCGCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGct                                                                  >  6:428419/1‑138 (MQ=255)                                                                     gTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTATAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTAATTGGctcc                                                                >  8:266215/1‑139 (MQ=255)                                                                          cATGTAATTCCCTCCTCTATCGTTCTTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTcca                                                           <  4:328227/139‑3 (MQ=255)                                                                          cATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTcca                                                           >  4:381456/1‑137 (MQ=255)                                                                             gTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCAAATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCAttt                                                        >  2:427098/1‑139 (MQ=255)                                                                               aaTTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTc                                                       >  2:134701/1‑138 (MQ=255)                                                                                 ttCCCTCCTCTATCGTTCGTACAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCATCATTGGCTCCGTCCATTTCAAg                                                    <  6:152538/139‑1 (MQ=255)                                                                                      tcctaTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCt                                               >  3:43945/1‑139 (MQ=255)                                                                                        ctctATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTATCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAAcatat                                             >  3:159462/1‑135 (MQ=255)                                                                                                ttcgtATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAg                                     >  7:90847/1‑139 (MQ=255)                                                                                                  cgtATAATCTATTTACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCg                                   >  4:320457/1‑139 (MQ=255)                                                                                                  cgtATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCTAAAGCg                                   >  7:80190/1‑139 (MQ=255)                                                                                                  cgtATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCg                                   >  3:117500/1‑139 (MQ=255)                                                                                                  cgtATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCg                                   >  2:33088/1‑139 (MQ=255)                                                                                                  cgtATAATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCg                                   >  5:133885/1‑139 (MQ=255)                                                                                                    tataATCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCgg                                  >  8:37335/1‑138 (MQ=255)                                                                                                     ataATCTATATACTTATATGTTCCACATGAATGGTTAAAATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCgg                                  >  2:254722/1‑137 (MQ=255)                                                                                                         tCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAgcgc                            >  6:158897/1‑139 (MQ=255)                                                                                                         tCTATATACTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAgcgc                            >  2:82743/1‑139 (MQ=255)                                                                                                             tataCTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGcttct                        >  5:324537/1‑139 (MQ=255)                                                                                                             tataCTTATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGcttct                        >  5:254023/1‑139 (MQ=255)                                                                                                             tataCATATATGTTCCACATGAATGGTTAATATTCCTGATTATCTAGATAATTCATCCTCGATTCTCAAAATCGTTTCTTCAAGCTCTTCATTGGCTACGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGcttat                        >  1:64966/1‑137 (MQ=255)                                                                                                                  ttATATGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCttcttttt                    >  4:129589/1‑136 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAg                                                    >  3:352047/1‑104 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAg                                                    <  4:352047/104‑1 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTg                   >  3:389953/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTg                   >  1:118129/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTg                   >  7:297996/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTg                   >  2:309466/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTg                   >  2:250577/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCACTTCTTTTTg                   >  3:27267/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTATTCATAGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCTGCAGCGCTTCTTTTTgaa                 >  8:362031/1‑137 (MQ=255)                                                                                                                    atatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCAGCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGACCCTTTTTCAAAAGCGGCAGCGCTTCTTTTTga                  <  8:159672/138‑2 (MQ=255)                                                                                                                     tatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTgaa                 >  2:371570/1‑136 (MQ=255)                                                                                                                     tatGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGAGGCAGCGCTTCTTTTTGAAg                >  1:404835/1‑139 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttca                                                                                 >  6:268511/1‑71 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttca                                                                                 <  5:268511/72‑2 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAATCGGCAGCGCTTCTTTTTgatgac              >  5:24620/1‑134 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAATCGGCAGCGCTTCTTTTTGAAgac              >  3:298776/1‑137 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              >  7:88656/1‑137 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              >  4:130295/1‑137 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              >  8:209192/1‑137 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              <  6:132535/139‑3 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              >  7:166241/1‑137 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              >  5:185317/1‑137 (MQ=255)                                                                                                                       tGTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              >  6:207119/1‑137 (MQ=255)                                                                                                                        gTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAgac              <  1:309466/138‑3 (MQ=255)                                                                                                                        gTTCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGAcc             >  1:130821/1‑139 (MQ=255)                                                                                                                         ttCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGAcca            >  5:166646/1‑138 (MQ=255)                                                                                                                         ttCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGAcc             <  6:254023/138‑1 (MQ=255)                                                                                                                         ttCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGAcc             <  6:324537/138‑1 (MQ=255)                                                                                                                         ttCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGAcc             <  6:11637/138‑1 (MQ=255)                                                                                                                         ttCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCACCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAACAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGAcc             <  5:292323/138‑1 (MQ=255)                                                                                                                          tCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACctt           >  5:132641/1‑139 (MQ=255)                                                                                                                          tCCACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACctt           >  6:61551/1‑139 (MQ=255)                                                                                                                           ccACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttcaa                                                                                <  6:250274/69‑3 (MQ=255)                                                                                                                           ccACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTttcttcaa                                                                                >  5:250274/1‑67 (MQ=255)                                                                                                                           ccACATGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACcttc          >  3:413278/1‑139 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGctc                                                                            <  5:448425/72‑1 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGctc                                                                            >  6:448425/1‑72 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGTCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACgttct         >  4:324404/1‑139 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACcttct         >  2:161552/1‑139 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACcttct         >  8:320234/1‑139 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACcttat         >  5:396748/1‑137 (MQ=255)                                                                                                                            cacaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAAACTTTTTCAAAAGCGCCAGCGCTTCTTTTTGAAGACcttct         >  6:292323/1‑139 (MQ=255)                                                                                                                             acaTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCACTTCTTTTTGAAGACcttctt        <  4:27267/139‑1 (MQ=255)                                                                                                                              caTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGACCCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGATGTCAttcttc       >  1:91693/1‑139 (MQ=255)                                                                                                                              caTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACcttc          >  6:27865/1‑136 (MQ=255)                                                                                                                              caTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACcttc          <  5:27865/136‑1 (MQ=255)                                                                                                                              caTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACCttcttc       >  5:78120/1‑139 (MQ=255)                                                                                                                              caTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACCttcttc       >  7:61497/1‑139 (MQ=255)                                                                                                                               aTGAATGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACCTtcttct      <  4:117500/139‑1 (MQ=255)                                                                                                                                   aTGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATTGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACCTTCTTCtaa    >  8:20332/1‑137 (MQ=255)                                                                                                                                   aTGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACCTTCTTCtaata  <  6:133885/139‑1 (MQ=255)                                                                                                                                   aTGGTTAATATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTTTCTTCAAGCTCTTCATTGGCTCCGTCCATTTCAAGAACCTTTTTCAAAAGCGGCAGCGCTTCTTTTTGAAGACCTTCTTCtaat   <  6:132641/138‑1 (MQ=255)                                                                                                                                        |                                                                                                                                      GGCGCTTTAACTGATAATGGTTTAAAAACCAACGGATAAAATCTTTTTTCTCATTGACAGAAACAGGGGTCTGCATGTAATTCCCTCCTCTATCGTTCGTATAATCTATATACTTATATGTTCCACATGAATGGTGAACATTCCTGCTTATCTAGAAAATTCATCCTCGATTCGCAAAATCGTCTCTTCCAGCTCTTCATTGGCCCCGTCAATTTCAAGAACCTTTTTCAAAAGCGGAAGCGCTTCTTTCTGCAGGCCTTCTTCTAATA  >  CP006881/2184047‑2184315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑