Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,184,674	A→C	G264G (GGT→GGG)	U712_10945 ←	TPR repeat‑containing protein ypiA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,184,674	0	A	C	100.0%	273.2 / NA	84	G264G (GGT→GGG)	U712_10945	TPR repeat‑containing protein ypiA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (36/48);  total (36/48)

TGAAGTGCCTCGACGAAGCCCGGATCAAGTGCAAGCGCCTCCTGAAGCAGCTGTTTCCCATCTTCTGACTTCCCGATTTTTAAAGCCATTTTTGCGGCATAGAGGAAAAGCTCTTTGTTATATTCATCATATCTGATACCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATCCCTTCAGCTTCATAGCTTTTCGAAAGCGGCATATAAAGTGAAGAATAAGACGGATCAAGCTCTTTTAAATCAGACAGCTGCTTAATAGCTGTTTTAA  >  CP006881/2184537‑2184807                                                                                                                                          |                                                                                                                                      tGAAGTGCCTCGACGAAGCCCGGATCAAGTGCAAGCGCCTCCTGAAGCAGCTGTTTCCCATCTTCTGACTTCCCGATTTTTAAAGCCATTTTTGCGGCATAGAGGAAAAGCTCTTTGTTATATTCATCATATCTGATa                                                                                                                                       <  7:390151/138‑1 (MQ=255)   aaGCGCCTCGACAAAGCCCGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATccc                                                                                                                                     <  5:33500/138‑1 (MQ=255)    agcgCCTCGACAAAGCCCGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCct                                                                                                                                   >  7:254009/4‑139 (MQ=255)     gcgCCTCGACAAAGCCCGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCctc                                                                                                                                  >  7:216032/3‑139 (MQ=255)       gCCTCGACAAAGCCCGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTAGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATccccgcgt                                                                                                                                >  5:1767/1‑135 (MQ=255)         cTCGACAAAGCCCGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCtttt                                                                                                                              >  6:200098/1‑139 (MQ=255)                 aGCCCGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGtttt                                                                                                                      >  7:181719/1‑139 (MQ=255)                   cccGGATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGttttt                                                                                                                     >  4:209365/1‑138 (MQ=255)                      ggATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATg                                                                                                                 >  7:177759/1‑139 (MQ=255)                      ggATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATg                                                                                                                 <  6:414311/139‑1 (MQ=255)                      ggATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATg                                                                                                                 <  6:190837/139‑1 (MQ=255)                      ggATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGGTTTTAATg                                                                                                                 <  5:397739/139‑1 (MQ=255)                      ggATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCCTCCCCTCTTCTGACTTCCCGATTATCAAGGCCAATTTGGCGGCATATAGGAAAAGTTCTATGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATg                                                                                                                 <  1:183455/139‑1 (MQ=255)                       gATCAAGCGCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGc                                                                                                                <  4:215357/139‑1 (MQ=255)                           aagcgcaagcgcCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCctc                                                                                                             <  5:281785/138‑1 (MQ=255)                             gcgCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCtt                                                                                                           >  7:400757/3‑138 (MQ=255)                             gcgCAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCtt                                                                                                           >  3:75359/3‑138 (MQ=255)                                cAAGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGTCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATa                                                                                                       <  6:55950/139‑1 (MQ=255)                                  aGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACa                                                                                                     <  6:35821/139‑1 (MQ=255)                                  aGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACa                                                                                                     <  8:254009/139‑1 (MQ=255)                                  aGCGCCTCCTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACa                                                                                                     <  3:392644/139‑1 (MQ=255)                                  aGCGCCTACTGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCGATTTTGGCGGCATAAAGGAAAAGTTCTGTGTTATATTCATCATATCTGATCCACTCTTTTGCAGATTTTAATGCCTCTTCATAc                                                                                                      >  6:138193/1‑138 (MQ=255)                                        tcctGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCt                                                                                                >  5:3604/1‑138 (MQ=255)                                        tcctGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCt                                                                                                >  3:252884/1‑138 (MQ=255)                                        tcctGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTAGATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCtt                                                                                               >  5:279585/1‑139 (MQ=255)                                         cctGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTc                                                                                              <  8:68250/139‑1 (MQ=255)                                          ctGAAGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCtt                                                                                               <  8:400757/137‑1 (MQ=255)                                             aaGCAGCTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCt                                                                                          >  5:200035/1‑139 (MQ=255)                                               gcagcTTCTTCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCtt                                                                                         >  8:146108/1‑138 (MQ=255)                                                  gcttcttCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCa                                                                                       >  4:393684/6‑137 (MQ=255)                                                   cttcttCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAg                                                                                    >  1:78455/5‑139 (MQ=255)                                                   cttcttCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCATTTGCCGTTTTTAATGCATAATCATACATTACTTCAGCTTCATAg                                                                                    >  1:331226/5‑139 (MQ=255)                                                        tCCCCTCTTCTGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCtttt                                                                               >  4:214903/1‑139 (MQ=255)                                                           cctcttctGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGa                                                                            <  5:329064/137‑1 (MQ=255)                                                             tcttctGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGa                                                                            >  2:18381/1‑137 (MQ=255)                                                                 ctGACTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGc                                                                        <  8:216032/137‑1 (MQ=255)                                                                    aCTTCCCGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATAATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGc                                                                     <  7:389148/137‑1 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGc                                                                                                                >  8:2450/1‑89 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGc                                                                                                                <  7:2450/89‑1 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCTCGAGCGGCAtata                                                                >  3:404668/1‑137 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGc                                                                        >  7:198118/1‑129 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGc                                                                        <  8:198118/129‑1 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCAtata                                                                >  5:111698/1‑137 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCAtata                                                                >  2:31296/1‑137 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCAtata                                                                >  4:214087/1‑137 (MQ=255)                                                                         ccGATTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATaa                                                               >  1:428729/1‑138 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  2:173824/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  2:390073/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  6:333025/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  6:3604/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  6:432590/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  6:200035/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  2:169791/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  1:335661/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  1:335675/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  4:75359/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  7:419186/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  4:118934/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  5:343936/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  8:177759/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  3:371226/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  5:200098/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  3:393684/139‑1 (MQ=255)                                                                            aTTTTCAAGGCCATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTg                                                           <  5:138193/139‑1 (MQ=255)                                                                                      ccATTTTGGCGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGa                                                 <  1:4699/139‑1 (MQ=255)                                                                                               cGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAg                                        <  2:78455/139‑1 (MQ=255)                                                                                               cGGCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAg                                        <  8:325552/139‑1 (MQ=255)                                                                                                ggCATAAAGGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGc                                       <  4:307000/139‑1 (MQ=255)                                                                                                    taaagGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCATCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGctcct                                   <  8:181719/136‑3 (MQ=255)                                                                                                    taaagGAAAAGTTCTTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGctcct                                   <  2:428729/136‑3 (MQ=255)                                                                                                               ttctTTGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGAc                        <  3:214903/138‑1 (MQ=255)                                                                                                                    tGTTATATTCATCATATCTGATCCGCTCATTTGCCGTTTTTAATGCCTCTTCCTACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATAAAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAg                      <  6:1767/136‑1 (MQ=255)                                                                                                                    tGTTATATTCATCATATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAg                      <  7:308360/136‑1 (MQ=255)                                                                                                                             catcatATCTGATCCCCTCTTTTGCCGTTTTTACTGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAg           <  7:200613/138‑1 (MQ=255)                                                                                                                             catcatATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAg           <  3:209365/138‑1 (MQ=255)                                                                                                                              atcatATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGa                                                 <  3:107330/99‑1 (MQ=255)                                                                                                                              atcatATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGa                                                 >  4:107330/1‑99 (MQ=255)                                                                                                                              atcatATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCt         >  7:181772/1‑139 (MQ=255)                                                                                                                              atcatATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCt         >  8:281169/1‑139 (MQ=255)                                                                                                                              atcatATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCt         >  3:64087/1‑139 (MQ=255)                                                                                                                                catATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGATAGCTGCATATAAAGTGAAGTATAATATGGATCAAGCTACTTTAAATCAGACAGCTGCTTAATAGCTGt       >  1:14782/1‑139 (MQ=255)                                                                                                                                catATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAgctg                   <  4:406725/127‑1 (MQ=255)                                                                                                                                catATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAgctg                   >  3:406725/1‑127 (MQ=255)                                                                                                                                catATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCTGt       >  2:423603/1‑139 (MQ=255)                                                                                                                                catATCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCTGt       >  3:380600/1‑139 (MQ=255)                                                                                                                                   atCTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTCATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGTATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCTGtttt    >  6:169621/1‑139 (MQ=255)                                                                                                                                     cTGATCCCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATTCCTTCAGCTTAATAGCTTTTCGAGAGCGGCATATAAAGTGAAGTATAAGATGGATCAAGCTCCTTTAAATCAGACAGCTGCTTAATAGCTGttttca  >  4:79114/1‑137 (MQ=255)                                                                                                                                          |                                                                                                                                      TGAAGTGCCTCGACGAAGCCCGGATCAAGTGCAAGCGCCTCCTGAAGCAGCTGTTTCCCATCTTCTGACTTCCCGATTTTTAAAGCCATTTTTGCGGCATAGAGGAAAAGCTCTTTGTTATATTCATCATATCTGATACCCTCTTTTGCCGTTTTTAATGCCTCTTCATACATCCCTTCAGCTTCATAGCTTTTCGAAAGCGGCATATAAAGTGAAGAATAAGACGGATCAAGCTCTTTTAAATCAGACAGCTGCTTAATAGCTGTTTTAA  >  CP006881/2184537‑2184807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑