Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006881 | 2,185,880 | T→C | T407T (ACA→ACG) | U712_10955 ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 2,185,880 | 0 | T | C | 97.9% | 146.2 / NA | 47 | T407T (ACA→ACG) | U712_10955 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (15/31); minor base A (0/1); total (15/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCATTCTGCACAAAAAATCCTGAAGGAAAATCTTCAGGATTTGTTTGAAAGCTTATTTAAATGCTCGAAAAAGGTTGGATAAGAAACGTGAATGGCATCTGTCTGCTCAATTTCAATTGGCTCTTCAGTTATACACGAAGCGATACCAAGCATCATTCCGATTCGATGATCTCCATGGCTGGACACTGTTGCGCCGCCTCTCAGTGTTTGCTTGCCATAAACCT > CP006881/2185781‑2186004 | atgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg > 3:281509/5‑139 (MQ=255) atgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg > 3:287422/5‑139 (MQ=255) tgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg < 4:157767/135‑1 (MQ=255) tgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg < 8:250184/135‑1 (MQ=255) tgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg < 7:210510/135‑1 (MQ=255) tgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg < 6:228438/135‑1 (MQ=255) tgatCTGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAg < 3:315626/135‑1 (MQ=255) tGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGctcct > 4:291376/1‑116 (MQ=255) tGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGctcct < 3:291376/118‑3 (MQ=255) tGCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTGGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATAc > 3:82397/1‑139 (MQ=255) gCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGtt < 4:291729/122‑1 (MQ=255) gCATAAAAAATCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGtt > 3:291729/1‑122 (MQ=255) cataaaaatTTCTGAATTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCTAAGAAGGTTGGATATGAATCGTGAATGGCATGCGTGTGCTCGATTTCAATCGGCTGCTCCGTTATACAGGAAGCAATAcc < 1:153485/135‑1 (MQ=255) cataaaaaaTCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATAcc > 1:153181/4‑138 (MQ=255) cataaaaaaTCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATAcc < 3:348155/135‑1 (MQ=255) cataaaaaaTCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATAcc > 5:37440/4‑138 (MQ=255) cataaaaaaTCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATAcc < 7:123030/135‑1 (MQ=255) cataaaaaaTCCTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCAGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCa < 3:248194/136‑1 (MQ=255) cataaaaaaTCCTGAA‑GTAAATCTTCAGGATTTTTTCGTTAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGTCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATAcc < 2:67735/135‑1 (MQ=255) ccTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCt < 2:329713/88‑1 (MQ=255) ccTGAAGTAAAA‑CTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGGGAATGGCATCCGTGTGCt > 1:329713/1‑88 (MQ=255) aagtaaaaCTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCg < 3:207313/133‑1 (MQ=255) agtaaaaCTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGAtt < 4:220739/136‑1 (MQ=255) aaacTTCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCgat > 6:128842/4‑139 (MQ=255) tCAGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGAGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGAtct > 7:99958/1‑139 (MQ=255) aGGATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGAtctc < 6:37440/138‑1 (MQ=255) ggATTTTTTCGAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTccg < 2:235710/139‑2 (MQ=255) cgAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGa < 7:428395/137‑1 (MQ=255) cgAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGa < 7:199228/137‑1 (MQ=255) cgAAAGCTTATTTAAATGCTCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGa < 8:370249/137‑1 (MQ=255) tttAAATGCTCGAAGAAGGTTGGATAAGAAAAGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGAAATAACAAGCATCATTCCGATTCGATTATCTCCGTGGCTGGACACTgcagctc < 3:120465/139‑7 (MQ=255) tCGAAGAAGGTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCtttc > 2:14393/1‑138 (MQ=255) gTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTttgtt < 1:14393/139‑3 (MQ=255) gTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTttgtt > 3:201102/1‑137 (MQ=255) gTTGGATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTttgtt < 4:82397/139‑3 (MQ=255) gATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGAtctc < 5:232981/96‑1 (MQ=255) gATAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGAtctc > 6:232981/1‑96 (MQ=255) aTAAGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTTTGTTTGCCa < 2:316471/139‑1 (MQ=255) atataCGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCTCCTTTCAACGTTTGTTTGACATa < 3:343508/134‑1 (MQ=255) aGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTTTGTTTGCCATa < 5:128842/138‑1 (MQ=255) aGAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTTTGTTTGCCATa < 7:49515/138‑1 (MQ=255) aGAAACGTGAATCGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTTTGTTTGCCATa < 4:429507/138‑1 (MQ=255) gAAACGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTGTCAACGTTTGTTTGCCATaaa > 4:94415/1‑139 (MQ=255) aCGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTTTGTTTGCCATAAACCt < 4:281509/139‑1 (MQ=255) aCGTGAATGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCTTTCAACGTTTGTTTGCCATAAACCt < 4:287422/139‑1 (MQ=255) aaTGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCtttc > 7:70007/1‑112 (MQ=255) aaTGGCATCCGTGTGCTCGATTTCAATCGGCTCCTCCGTTATACAGGAAGCAATACCAAGCATCATTCCGATTCGATGATCTCCGTGGCTGGACACTGCAGCGCCGCCtttc < 8:70007/112‑1 (MQ=255) | GCATTCTGCACAAAAAATCCTGAAGGAAAATCTTCAGGATTTGTTTGAAAGCTTATTTAAATGCTCGAAAAAGGTTGGATAAGAAACGTGAATGGCATCTGTCTGCTCAATTTCAATTGGCTCTTCAGTTATACACGAAGCGATACCAAGCATCATTCCGATTCGATGATCTCCATGGCTGGACACTGTTGCGCCGCCTCTCAGTGTTTGCTTGCCATAAACCT > CP006881/2185781‑2186004 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |