| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,186,159 | T→G | I314I (ATA→ATC) | U712_10955 ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,186,159 | 0 | T | G | 99.0% | 329.9 / NA | 101 | I314I (ATA→ATC) | U712_10955 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (45/55); minor base C (1/0); total (46/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 101 total aligned reads displayed.
AATCTCAGCACCTAGCTTACGAAGCTCAGAAACCACGGTGTCAATGCGGTTTGTTTCTTTTACTTTAAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGGGTCGCAAGAAGCGCAATGATAGGTATTTCATCAATTAAACGCGGAATGATATCTCCACCAATTTCAACCGCTTTTAGAGATGACGTTTCTATGACCAAATCACCGTAAGGCTCTGCACTGCTGTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCA > CP006881/2186027‑2186292 | aaTTTCAGCACCCAGCTTGCGAAGCTCAGAAACAACAGTATCAATACGGTTTGTTTATTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGAtcta > 7:110785/1‑135 (MQ=255)aaTTTCAGCACCCAGCTTGCGAAGCTCAGAAACAACACTATAAATACCGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAAAAACCGTTTTTCCTTCCGACATAGTCGCAAGAAGCGCCAAGATAGGGAtcaca > 4:219273/1‑135 (MQ=255) aCCCAGCTTGCGAAGCTCAGAAACAACAGTATCAATACGGTTTGATTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTaaa < 6:314198/139‑1 (MQ=255) ccaGCTTGCGAAGCTCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAAcg < 7:319159/137‑1 (MQ=255) ccaGCTTGCGAAGCTCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAAcg < 7:193123/137‑1 (MQ=255) aGCTTGCGAAGCTCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAAcgcg < 1:257344/139‑1 (MQ=255) cTTGCGAAGCTCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGa < 1:328856/139‑1 (MQ=255) gcGAAGCTCAGAAACAACAGTATCAATACGGTTTGTGTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAAt > 8:256604/2‑138 (MQ=255) gCTCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATAtc > 3:404684/1‑139 (MQ=255) tCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGAt < 1:238503/110‑1 (MQ=255) tCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGAt > 2:238503/1‑110 (MQ=255) tCAGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATAtctc > 3:396979/1‑139 (MQ=255) aGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTcct < 4:396979/139‑2 (MQ=255) aGAAACAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTcct < 6:1098/139‑2 (MQ=255) aaaCAACAGTATCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGGGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCtcctcc < 2:314712/139‑1 (MQ=255) acagtatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTTAACGCGGAATGATATCTCCTCCGAttt > 7:47375/7‑139 (MQ=255) acagtatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGAttt > 7:57827/7‑139 (MQ=255) gtatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCaa < 1:196123/136‑1 (MQ=255) gtatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCaa < 8:404003/136‑1 (MQ=255) gtatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCaa > 2:223426/4‑139 (MQ=255) gtatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGAGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCaa < 3:69624/136‑1 (MQ=255) tatCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGGCCTTAATAACGGTGGTGCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAAc < 8:319080/137‑1 (MQ=255) atCAATACGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAAct > 6:419589/2‑138 (MQ=255) tacGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCctt < 1:223426/137‑1 (MQ=255) acGGTTTGTTTCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCctt > 4:409039/2‑138 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTcct > 1:152128/1‑117 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTcct < 2:152128/118‑2 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTTAACTGCCTTTa > 1:99920/1‑137 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTa > 5:25307/1‑137 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTa > 7:427272/1‑137 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTa > 3:41364/1‑137 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCCCCGATTTCaa > 3:103108/1‑128 (MQ=255) gtttgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCCCCGATTTCaa < 4:103108/128‑1 (MQ=255) tgtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGAt > 3:20333/1‑139 (MQ=255) gtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGAt > 8:375752/1‑138 (MQ=255) gtttCTTTCACTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGAt > 4:375009/1‑138 (MQ=255) aCTTTTAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCt < 7:256604/138‑1 (MQ=255) ttttAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTAt > 1:43648/1‑138 (MQ=255) gcgctGCCGCGTCCTTAATAACGGTTGTTCCTTCCTCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATTATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCaa < 4:102802/136‑1 (MQ=255) gCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCaa < 6:25307/139‑1 (MQ=255) tGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt < 8:239103/137‑1 (MQ=255) tGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt < 3:131460/137‑1 (MQ=255) tGCCGCGTCCTTAATAACGGTGGTTCCTTCAGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt < 3:38438/137‑1 (MQ=255) tGCCGCCTCCTTAATAACGGTGGTTCCTTCCGCCTGAGGCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCGTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt < 1:411808/137‑1 (MQ=255) gCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACTCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTAtaatc > 5:360172/1‑128 (MQ=255) gCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAAt > 8:60195/1‑83 (MQ=255) gCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAAt < 7:60195/83‑1 (MQ=255) gCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTAtaatc < 6:360172/132‑5 (MQ=255) gCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt < 4:195507/136‑1 (MQ=255) gCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt > 3:195507/1‑136 (MQ=255) ccGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATct < 8:110785/137‑2 (MQ=255) cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTccat > 2:80363/1‑136 (MQ=255) cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 7:375752/139‑1 (MQ=255) cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 6:132644/139‑1 (MQ=255) cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 8:432315/139‑1 (MQ=255) cgTCCTTAATAACGGTGGTGCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 8:91860/139‑1 (MQ=255) gTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATaa < 3:144052/139‑1 (MQ=255) tCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAg > 8:116259/1‑139 (MQ=255) tCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAg > 4:281100/1‑139 (MQ=255) tCCTTAATAACGGTGGTTCCTTACGCCTGAGTCGCAAGAAGCGCCAAGATAGGCAACACAACAATTAAACCCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGAAGACGTTTCAATAATCAAATCACCATAAg > 4:277329/1‑139 (MQ=255) cTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAgg < 3:409039/138‑1 (MQ=255) aataaCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGata < 8:280081/76‑1 (MQ=255) aataaCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGata > 7:280081/1‑76 (MQ=255) aataaCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGct < 8:57827/137‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTTAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 2:99920/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 7:49750/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 3:375009/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 3:277329/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 5:419589/138‑1 (MQ=255) cGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCtcat < 5:121367/51‑1 (MQ=255) cGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCtcat > 6:121367/1‑51 (MQ=255) cGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 4:341653/127‑1 (MQ=255) cGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa > 3:341653/1‑127 (MQ=255) gtggtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgc > 6:137222/1‑139 (MQ=255) tggtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgct < 7:116259/139‑1 (MQ=255) tggtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgct < 3:407960/139‑1 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 7:74636/1‑137 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 3:63361/1‑137 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 7:247706/1‑137 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 4:7244/1‑137 (MQ=255) tccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 2:8066/126‑1 (MQ=255) tccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa > 1:8066/1‑126 (MQ=255) tccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATcag > 6:48266/1‑136 (MQ=255) ccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATcagca < 3:206543/137‑1 (MQ=255) ccTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 6:354100/112‑1 (MQ=255) ccTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa > 5:354100/1‑112 (MQ=255) cTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGt < 5:438726/139‑1 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCTTCAATTAAACGCGGTATGATATCTGCTCCGATTTCATCTGCCTTTAGAGATGACGTTTCTATATTCTTTTCTCCATAAGGGTCTGCTCCGCTATCAGCAGATGGTTTg > 5:359438/2‑139 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt < 7:238010/100‑1 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAAt > 8:238010/2‑101 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGttt > 1:199016/2‑138 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTGAGAGAACACGTTTCTATAATCAAATCTCCATATGGCTCTGCACCGCTATCAGCAGATGGatt > 5:365445/2‑138 (MQ=255) agTCGCAAGAAGCGCGAGGATAGGGCTCTCATCAATTAAACGCGGAATCATATCTCCTCCGATTTCAACTGCCTTTAGAGATCACGTTTCTATAATCAAATCTCCATAATGCTCTGCACCGCTATCACAAGATGGttt > 2:366445/2‑138 (MQ=255) cAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTc < 7:57636/139‑1 (MQ=255) cgcgATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCaa < 8:114728/56‑1 (MQ=255) cgcgATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCaa > 7:114728/1‑56 (MQ=255) aTAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGccccc < 7:405517/138‑1 (MQ=255) aTAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCGCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCa < 2:289312/139‑1 (MQ=255) tAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat < 3:366628/105‑3 (MQ=255) tAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 4:366628/1‑103 (MQ=255) | AATCTCAGCACCTAGCTTACGAAGCTCAGAAACCACGGTGTCAATGCGGTTTGTTTCTTTTACTTTAAGCTCTGCCGCGTCCTTAATAACGGTGGTTCCTTCCGCCTGGGTCGCAAGAAGCGCAATGATAGGTATTTCATCAATTAAACGCGGAATGATATCTCCACCAATTTCAACCGCTTTTAGAGATGACGTTTCTATGACCAAATCACCGTAAGGCTCTGCACTGCTGTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCA > CP006881/2186027‑2186292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |