| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,186,237 | A→T | G288G (GGT→GGA) | U712_10955 ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,186,237 | 0 | A | T | 98.9% | 272.8 / NA | 88 | G288G (GGT→GGA) | U712_10955 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base T (33/54); total (34/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTCCTTAATAACGGTGGTTCCTTCCGCCTGGGTCGCAAGAAGCGCAATGATAGGTATTTCATCAATTAAACGCGGAATGATATCTCCACCAATTTCAACCGCTTTTAGAGATGACGTTTCTATGACCAAATCACCGTAAGGCTCTGCACTGCTGTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATGATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTTAATACAATCTTACTGTTTG > CP006881/2186104‑2186367 | cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTccat > 2:80363/1‑136 (MQ=255)cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 8:432315/139‑1 (MQ=255)cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 6:132644/139‑1 (MQ=255)cgTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 7:375752/139‑1 (MQ=255)cgTCCTTAATAACGGTGGTGCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 8:91860/139‑1 (MQ=255) gTCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATaa < 3:144052/139‑1 (MQ=255) tCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAg > 4:281100/1‑139 (MQ=255) tCCTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAg > 8:116259/1‑139 (MQ=255) tCCTTAATAACGGTGGTTCCTTACGCCTGAGTCGCAAGAAGCGCCAAGATAGGCAACACAACAATTAAACCCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGAAGACGTTTCAATAATCAAATCACCATAAg > 4:277329/1‑139 (MQ=255) cTTAATAACGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAgg < 3:409039/138‑1 (MQ=255) aataaCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGct < 8:57827/137‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTTAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 2:99920/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 3:277329/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 5:419589/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 3:375009/138‑1 (MQ=255) aCGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 7:49750/138‑1 (MQ=255) cGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 4:341653/127‑1 (MQ=255) cGGTGGTTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa > 3:341653/1‑127 (MQ=255) gtggtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgc > 6:137222/1‑139 (MQ=255) tggtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgct < 7:116259/139‑1 (MQ=255) tggtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgct < 3:407960/139‑1 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 7:74636/1‑137 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 4:7244/1‑137 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 7:247706/1‑137 (MQ=255) gtTCCTTCCGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 3:63361/1‑137 (MQ=255) tccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 2:8066/126‑1 (MQ=255) tccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa > 1:8066/1‑126 (MQ=255) tccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATcag > 6:48266/1‑136 (MQ=255) ccGCCTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATcagca < 3:206543/137‑1 (MQ=255) ccTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa > 5:354100/1‑112 (MQ=255) ccTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATa < 6:354100/112‑1 (MQ=255) cTGAGTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGt < 5:438726/139‑1 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCTTCAATTAAACGCGGTATGATATCTGCTCCGATTTCATCTGCCTTTAGAGATGACGTTTCTATATTCTTTTCTCCATAAGGGTCTGCTCCGCTATCAGCAGATGGTTTg > 5:359438/2‑139 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGttt > 1:199016/2‑138 (MQ=255) agTCGCAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTGAGAGAACACGTTTCTATAATCAAATCTCCATATGGCTCTGCACCGCTATCAGCAGATGGatt > 5:365445/2‑138 (MQ=255) agTCGCAAGAAGCGCGAGGATAGGGCTCTCATCAATTAAACGCGGAATCATATCTCCTCCGATTTCAACTGCCTTTAGAGATCACGTTTCTATAATCAAATCTCCATAATGCTCTGCACCGCTATCACAAGATGGttt > 2:366445/2‑138 (MQ=255) cAAGAAGCGCGATGATAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTc < 7:57636/139‑1 (MQ=255) aTAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGccccc < 7:405517/138‑1 (MQ=255) aTAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCGCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCa < 2:289312/139‑1 (MQ=255) tAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat < 3:366628/105‑3 (MQ=255) tAGGGATCTCATCAATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCAccgctat > 4:366628/1‑103 (MQ=255) ctcatcaATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTg > 3:132650/2‑138 (MQ=255) ctcatcaATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTGTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTg > 8:257366/2‑138 (MQ=255) catcaATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATcagca > 8:128292/1‑101 (MQ=255) catcaATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATcagca < 7:128292/101‑1 (MQ=255) catcaATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAg > 1:2527/1‑139 (MQ=255) caATTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 1:288657/139‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 4:41364/138‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 2:2527/138‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 5:137222/138‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 3:7244/138‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 4:20333/138‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACa < 3:91410/139‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACa < 2:199016/139‑1 (MQ=255) aaTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTAAAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 8:427272/138‑1 (MQ=255) aTTAAACGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACAt > 4:351206/1‑139 (MQ=255) aaCGCGGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAAt < 4:63361/139‑1 (MQ=255) cgcgGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTg > 3:11333/1‑112 (MQ=255) cgcgGAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTg < 4:11333/112‑1 (MQ=255) ggAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc > 2:183402/1‑128 (MQ=255) ggAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 1:183402/128‑1 (MQ=255) ggAATGATATCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATAc < 4:132650/139‑1 (MQ=255) atatCTCCTCCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTcc < 1:80363/139‑1 (MQ=255) ctcctcCGATTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGt > 8:234980/1‑139 (MQ=255) cctccgaTTTCATCTGCCTTTAGAGATGACGTTACTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGAAGCTTTGATTTCACGTTTTGCCCCCATGTTTTGAGGGCCCTCAATATTACCTGTCCTAGTCg > 8:104782/7‑139 (MQ=255) cctccgaTTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCg > 1:18040/7‑139 (MQ=255) ctgcgaTTTCTACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACAGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGt < 1:366445/131‑1 (MQ=255) ctccgaTTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGt < 3:281100/131‑1 (MQ=255) aTTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa < 3:260694/57‑1 (MQ=255) aTTTCAACTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCa > 4:260694/1‑57 (MQ=255) aaCTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc > 5:300602/1‑105 (MQ=255) aaCTGCCTTTAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGAc < 6:300602/105‑1 (MQ=255) tAGAGATGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGttttt < 2:385549/138‑1 (MQ=255) gagaTGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCaa < 8:247706/139‑1 (MQ=255) gagaTGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGGTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCaa < 8:74636/139‑1 (MQ=255) gaTGACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTG‑CCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTATACCTACGTTTTTCAATa < 3:169360/138‑1 (MQ=255) gACGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACaa > 5:184697/1‑139 (MQ=255) aCGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCaa < 8:380352/93‑1 (MQ=255) aCGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCaa > 7:380352/1‑93 (MQ=255) aCGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCATTAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAAt > 8:332967/1‑139 (MQ=255) aCGTTTCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACaa < 6:365445/138‑1 (MQ=255) aCGTTTCAATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTATGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACaa < 6:359438/138‑1 (MQ=255) tCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAAttctg < 7:257366/138‑5 (MQ=255) tCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAAttctg < 6:299554/138‑5 (MQ=255) tCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAAttctg < 5:48266/138‑5 (MQ=255) tCTATAATCAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAAttctg < 2:43648/138‑5 (MQ=255) tCTATAATCAAATCTCCATAAGGCTCTGCACCGCTAGCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAAttctg < 7:67996/138‑5 (MQ=255) tcAAATCTCCATAAGGCTCTGCACCGCTATCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTg > 3:421283/2‑138 (MQ=255) | CGTCCTTAATAACGGTGGTTCCTTCCGCCTGGGTCGCAAGAAGCGCAATGATAGGTATTTCATCAATTAAACGCGGAATGATATCTCCACCAATTTCAACCGCTTTTAGAGATGACGTTTCTATGACCAAATCACCGTAAGGCTCTGCACTGCTGTCAGCAGATGGTTTGATTTCAAGTTTTGCCCCCATGTTTTGAAGGACATCAATGATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTTAATACAATCTTACTGTTTG > CP006881/2186104‑2186367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |