Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,186,432	G→A	A223A (GCC→GCT)	U712_10955 ←	3‑phosphoshikimate 1‑carboxyvinyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,186,432	0	G	A	100.0%	292.6 / NA	95	A223A (GCC→GCT)	U712_10955	3‑phosphoshikimate 1‑carboxyvinyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (43/52);  total (43/52)

AAGGACATCAATGATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTTAATACAATCTTACTGTTTGGAACCATTGCACCCGCAATAAGGAAAAACGCCGCTGAAGAAATGTCTCCAGGAACAAAAATATCGGCAGCTGTCAATTTCTGGCCGCCTGTAATAGAAACACTCGTTTGATCTTCAGAAAGCTTAACACCAAAAGCAGAAAGCATCCGCTCAGTATGGTCCCGAGATTTATGAGGCTCTGTGACGGTAGTTGTGCCCTC  >  CP006881/2186300‑2186566                                                                                                                                     |                                                                                                                                       aaGGACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCt                                                                                                                                  >  8:3702/1‑139 (MQ=255)   ggACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGt                                                                                                                                <  6:232666/139‑1 (MQ=255)   ggACATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGt                                                                                                                                <  6:81503/139‑1 (MQ=255)      cATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAACCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCag                                                                                                                             >  6:399693/1‑138 (MQ=255)      cATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGTGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCag                                                                                                                             >  4:252965/1‑138 (MQ=255)      cATCAATAATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCag                                                                                                                             >  2:344634/1‑138 (MQ=255)          aataatACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTc                                                                                                                         <  8:210199/139‑1 (MQ=255)              aTACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAACCGCGTCTGAAGCAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTgtc                                                                                                                     >  2:407981/1‑137 (MQ=255)               tACCTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgcc                                                                                                                    >  2:7931/1‑139 (MQ=255)                 ccTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATTAAATTGTGCTGTTTGGAAGCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccac                                                                                                                  <  4:48581/139‑3 (MQ=255)                 ccTGTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccac                                                                                                                  >  4:350111/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAATGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  5:150688/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATcagcag                                                                                                                                    >  4:366138/1‑118 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATcagcag                                                                                                                                    <  3:366138/118‑1 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  7:63393/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  2:132540/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  7:394541/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  5:368473/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  5:76825/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  2:364980/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  3:287467/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  2:391274/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  6:373133/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  1:258846/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  1:233557/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAACAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAACTATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  6:283855/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGAAGCAAGGAAAAACTCGGCTGAAGAAATGTCTCAAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  3:48581/1‑137 (MQ=255)                    gTCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACAATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccag                                                                                                               >  7:367960/1‑137 (MQ=255)                    gTCAGAGTCGGATTTAAACCTACGTTTTTCAATACAAAACTGCTGTTTGGAACAATCGAGCCAGCAGCAAGGAAAAAAGCGGATGAAGAAATGTCTCCATGAACAAAAATATAATCACCTGTCAGAATCTGgccaccag                                                                                                               >  5:213683/1‑137 (MQ=255)                     tCCGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc                                                                                                              <  1:132540/139‑4 (MQ=255)                      ccGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc                                                                                                              >  6:238443/1‑135 (MQ=255)                      ccGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc                                                                                                              >  3:399070/1‑135 (MQ=255)                      ccGAGTCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGgccaccagc                                                                                                              >  7:279206/1‑135 (MQ=255)                           tCGGATTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGa                                                                                                        <  6:368473/139‑1 (MQ=255)                               aTTTAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAaca                                                                                                    <  6:76825/139‑1 (MQ=255)                                 ttAAACCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTTAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACt                                                                                                  >  6:31114/1‑139 (MQ=255)                                     aCCTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGtt                                                                                              <  8:367960/139‑1 (MQ=255)                                       cTACGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTg                                                                                            <  8:394541/139‑1 (MQ=255)                                         aCGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt                                                                                          >  2:365446/1‑139 (MQ=255)                                         aCGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt                                                                                          >  1:222138/1‑139 (MQ=255)                                          cGTTTTTCAATACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGGCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt                                                                                          <  8:115148/138‑1 (MQ=255)                                                 caaTACAATTCTGCTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGa                                                                                   <  3:87987/137‑1 (MQ=255)                                                         ttctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt                                                                                          >  4:325812/6‑123 (MQ=255)                                                         ttctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGAt                                                                                          <  3:325812/118‑1 (MQ=255)                                                         ttctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAac                                                                          >  4:308863/6‑139 (MQ=255)                                                         atctgcTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAACCGCGGCTGAAGAAAGGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGACCCCAGCAATCGAAACACTCGTTTGATCTTCAGAAAGCTTAac                                                                          >  6:52802/6‑139 (MQ=255)                                                              cTGTTTGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCaa                                                                     <  8:94155/139‑1 (MQ=255)                                                                 tttGGAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCGAAAg                                                                  >  5:37913/1‑139 (MQ=255)                                                                     gAACCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAg                                                               <  8:63393/138‑1 (MQ=255)                                                                      aaCCATCGCGCCAGCAGCAAGGAAAACCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGaa                                                             <  4:421283/139‑1 (MQ=255)                                                                      aaCCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGaa                                                             <  5:221635/139‑1 (MQ=255)                                                                      aaCCATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGaa                                                             <  2:18040/139‑1 (MQ=255)                                                                        ccATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAg                                                           >  5:344217/1‑139 (MQ=255)                                                                        ccATCGCGCCAGCAGCAAGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAg                                                           >  5:58938/1‑139 (MQ=255)                                                                                    cagcaaGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGt                                               <  5:31114/135‑1 (MQ=255)                                                                                     agcaaGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGtg                                              <  4:65250/136‑2 (MQ=255)                                                                                     agcaaGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGtg                                              <  2:119616/136‑2 (MQ=255)                                                                                       caaGGAAAAACGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGtgtg                                            <  3:351206/138‑1 (MQ=255)                                                                                            aaaaaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       <  1:7931/139‑1 (MQ=255)                                                                                            aaaaaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       >  2:168839/1‑139 (MQ=255)                                                                                            aaaaaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       <  6:58938/139‑1 (MQ=255)                                                                                            aaaaaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       <  6:344217/139‑1 (MQ=255)                                                                                            aaaaaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       <  3:308073/139‑1 (MQ=255)                                                                                             aaaaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       <  4:287467/138‑1 (MQ=255)                                                                                               aaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTCACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCgag                                    <  2:258846/139‑1 (MQ=255)                                                                                               aaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTccc                                       >  6:292325/1‑136 (MQ=255)                                                                                               aaCGCGGCTGAAGAAATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCgag                                    >  1:160888/1‑139 (MQ=255)                                                                                                         cagaaCTGTCTCGAGTAACAAAAATATCAGCAGCTGGCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTACCGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  4:376258/138‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  3:350111/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  1:391274/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  4:399070/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  5:399693/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  3:244137/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  2:160888/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  5:238443/139‑1 (MQ=255)                                                                                                         aagaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTGCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGGCCCGAGATTTATgggg                          <  6:221227/139‑1 (MQ=255)                                                                                                          agaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATgggg                          <  1:365446/138‑1 (MQ=255)                                                                                                           gaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGct                        <  3:308863/139‑1 (MQ=255)                                                                                                           gaaATGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGct                        <  3:252965/139‑1 (MQ=255)                                                                                                              aTGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGtg                                              <  6:181428/114‑2 (MQ=255)                                                                                                              aTGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGtg                                              >  5:181428/1‑113 (MQ=255)                                                                                                               tGTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCtgt                    <  5:292325/139‑1 (MQ=255)                                                                                                                gTCTCCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCtgtt                   >  2:219696/1‑138 (MQ=255)                                                                                                                   tcCAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCtgtta                  >  4:435707/1‑135 (MQ=255)                                                                                                                     cAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTAcag               <  2:233557/138‑3 (MQ=255)                                                                                                                     cAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTAca                <  7:399178/137‑2 (MQ=255)                                                                                                                     cAGGAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTAc                 <  3:101526/136‑1 (MQ=255)                                                                                                                     cAGGAACAAAAATATCAGCAGCTGTCAGGTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTAcag               <  1:364980/138‑3 (MQ=255)                                                                                                                        gAACAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAATCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTACAGTTGt           <  6:150688/139‑1 (MQ=255)                                                                                                                          aCAAAAATATCAGCAGCGGGCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGACAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGCGATTTATGGGGCTCTGTTACAGttgttg         <  6:240584/139‑1 (MQ=255)                                                                                                                           cAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCa                                                         >  4:345300/1‑90 (MQ=255)                                                                                                                           cAAAAATATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCa                                                         <  3:345300/90‑1 (MQ=255)                                                                                                                            aaaaaTATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTACAGTTGTtgtg       <  1:407981/139‑1 (MQ=255)                                                                                                                             aaaaTATCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTACAGTTGTTGTGc      >  8:399144/1‑139 (MQ=255)                                                                                                                                atatCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTACAGTTGTTGTGCCCt   <  5:53779/139‑1 (MQ=255)                                                                                                                                 tatCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTACAGTTGTTGTGCCCTc  <  6:79564/139‑1 (MQ=255)                                                                                                                                 tatCAGCAGCTGTCAGTTTCTGGCCACCAGCAATGGAAACACTCGTTTGATCTTCAGAAAGCTTAACGCCAAAAGCAGAAAGCATCCGCTCAGTGTGGTCCCGAGATTTATGGGGCTCTGTTACAGTTGTTGTGCCCTc  <  1:344634/139‑1 (MQ=255)                                                                                                                                     |                                                                                                                                       AAGGACATCAATGATACCTGTCCGAGTCGGATTTAAACCTACGTTTTTTAATACAATCTTACTGTTTGGAACCATTGCACCCGCAATAAGGAAAAACGCCGCTGAAGAAATGTCTCCAGGAACAAAAATATCGGCAGCTGTCAATTTCTGGCCGCCTGTAATAGAAACACTCGTTTGATCTTCAGAAAGCTTAACACCAAAAGCAGAAAGCATCCGCTCAGTATGGTCCCGAGATTTATGAGGCTCTGTGACGGTAGTTGTGCCCTC  >  CP006881/2186300‑2186566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑