| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006881 | 2,186,897 | T→G | V68V (GTA→GTC) | U712_10955 ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 2,186,897 | 0 | T | G | 98.9% | 287.9 / NA | 89 | V68V (GTA→GTC) | U712_10955 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (48/40); total (49/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCTCCGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAAAATGCCGAGCATGAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCACTCAGGGAATCGATTCCATTTCCGTGAATCACTACATTGCTGCCGTTTTGCTCAATTTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCCGCTCCCGGCAGAAAGTTTTTCACAGTTGTTGTGCCCTTCGCTAGCGCGCCAAACATGA > CP006881/2186762‑2187024 | aTCTCCGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGAc > 5:276678/1‑138 (MQ=255)aTCTCCGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACa > 5:189388/1‑139 (MQ=255) cGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTTTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgct > 2:82164/1‑139 (MQ=255) cGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGAc < 8:253044/133‑1 (MQ=255) cGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGAc > 7:253044/1‑133 (MQ=255) cGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgct > 7:266131/1‑139 (MQ=255) ggCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTTTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg < 1:82164/139‑1 (MQ=255) ggCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg < 7:50440/139‑1 (MQ=255) ggCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg < 1:18442/139‑1 (MQ=255) ggCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg < 7:348305/139‑1 (MQ=255) ggCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg < 7:191969/139‑1 (MQ=255) ggCTACCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgcag > 7:115960/1‑137 (MQ=255) aCCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctgctgc < 3:283721/139‑4 (MQ=255) aCCGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCAGACATCTAAAAGGCTTTCTGGCTCTTTCAGTGCATCGATTCCTTTTCCGTGAATCACTACATagcctgtc > 5:166955/1‑133 (MQ=255) ccGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctgctgct < 6:38322/139‑5 (MQ=255) ccGCGCTGTAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctgctgct < 6:169035/139‑5 (MQ=255) cgcgCTGTAAAAAGGCCGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTGCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAAGCGCGACATcggtgctggtt > 2:389875/1‑134 (MQ=255) cTGTACAAAGGACGGCCCGACAATATTCCGAGCATCAGTCGAATCCTTGTACCTGAATTTCCGACATCTAACAGGCGTTCTGGCTCTTTCAGGGCATCGCTTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCt < 2:44219/139‑1 (MQ=255) tAAAACGGCCGGCCCGCCAATAATCCGAGCATCAGGCGAATCGTAGTACCTGAATTTCAGACATCTAAAAGGCTTTCTGGCTCATTCAGGGCCTCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTc < 1:392831/137‑1 (MQ=255) tAAAAAGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCGTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCaa < 7:226707/139‑1 (MQ=255) tAAAAAGGAAGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCTACATCTAAAAGGCTTTCTGGCTCTTTCAGTGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTc < 8:7151/137‑1 (MQ=255) aGGACGGCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAAtgtg > 6:336619/1‑138 (MQ=255) ggACGGCCCGCGAATAGTCCGAGCAGCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGGATCGATTCCTTTTCCGGTAATCACGACATCGCTGCTGCGTTGCTCAATGTGaa < 4:52958/139‑1 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGCCATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAcc > 6:153261/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg > 2:429400/1‑116 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctg < 1:429400/116‑1 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCTATGTGAACAcc > 8:445822/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAcc > 1:122822/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAcc > 2:5478/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAcc > 7:182493/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAcc > 7:259418/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAcc > 7:305091/1‑139 (MQ=255) ggCCCGCCAATATTCCGAGCATCAGGCGAATAGTTGTACATGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGGACAcc > 5:173554/1‑139 (MQ=255) cAATATTCCGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCAtttt > 2:138213/1‑138 (MQ=255) tattccGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTa < 5:336619/135‑1 (MQ=255) ttccGAGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTa > 8:121982/3‑137 (MQ=255) aGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctgctgct < 3:240744/104‑5 (MQ=255) aGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATcgctgctgct > 4:240744/1‑100 (MQ=255) aGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAat > 7:108449/1‑139 (MQ=255) aGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAat < 6:189388/139‑1 (MQ=255) aGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACAACCATTTTTCTAAAGCAat > 4:295379/1‑139 (MQ=255) aGCATCAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTGTCAGGGCATCGATTCGTTTTCCGTGAATCACGACATCGATGATGCTTTGCTCAATGTGAACACCGTTTTTTCTAAAGAAat > 4:293198/1‑139 (MQ=255) tcaGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAatcgat < 4:130236/137‑1 (MQ=255) tcaGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCAGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAatcgat < 6:276678/137‑1 (MQ=255) caGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAatcgatc > 5:346565/2‑139 (MQ=255) caGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAatcgatc > 4:20245/2‑139 (MQ=255) aaTCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTc < 7:121982/139‑1 (MQ=255) tGTACCTGAATTTACGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTAGCTCAATGTGAACACCCATTTATCTAAAGCAAACGATCGTGCTCAGACa > 3:157610/1‑138 (MQ=255) aaTTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTc < 1:138213/138‑1 (MQ=255) tttCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCg > 7:158916/1‑139 (MQ=255) tCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTaa > 4:242509/1‑104 (MQ=255) tCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTaa < 3:242509/104‑1 (MQ=255) tCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCgg > 4:112831/1‑138 (MQ=255) tCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCgg > 7:211433/1‑138 (MQ=255) cGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCgg > 3:37058/1‑136 (MQ=255) gACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGGACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa < 6:173554/139‑1 (MQ=255) gACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa < 8:211433/139‑1 (MQ=255) cTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTa > 2:376539/1‑95 (MQ=255) cTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTa < 1:376539/95‑1 (MQ=255) cTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAATGtt > 7:47262/1‑139 (MQ=255) aGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGtttttaa < 8:158916/139‑3 (MQ=255) gCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTaact < 1:114363/139‑2 (MQ=255) ttCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa < 3:100418/124‑1 (MQ=255) ttCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgtt > 4:379438/1‑139 (MQ=255) ttCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCAATTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa > 4:100418/1‑124 (MQ=255) tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGtttttaa > 3:187752/1‑131 (MQ=255) tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGtttttaa < 4:187752/133‑3 (MQ=255) tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgttg > 5:178919/1‑139 (MQ=255) tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgttg > 1:152939/1‑139 (MQ=255) gctctttcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgttgtt < 8:182493/131‑1 (MQ=255) ctttcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGcc > 4:142062/4‑139 (MQ=255) ctttcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGcc > 8:337236/4‑139 (MQ=255) tcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGcc < 3:112831/136‑1 (MQ=255) tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa > 2:88299/1‑105 (MQ=255) tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa < 1:88299/105‑1 (MQ=255) tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcg > 2:285922/1‑139 (MQ=255) tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcg < 8:266131/139‑1 (MQ=255) gATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcg < 1:389875/139‑1 (MQ=255) gATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcg < 1:194218/139‑1 (MQ=255) aTTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcgc > 6:428019/1‑139 (MQ=255) ttCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGcc < 8:115960/139‑1 (MQ=255) ttCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGcc < 6:346565/139‑1 (MQ=255) ttCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGcc < 3:144481/139‑1 (MQ=255) ttttCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATATGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGACTGCAGCTAGCGCGCCaaa > 8:406894/2‑138 (MQ=255) tttCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCTGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCatcc > 5:237749/1‑135 (MQ=255) ttCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACa > 7:15953/1‑138 (MQ=255) ccGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTa > 4:121758/1‑54 (MQ=255) ccGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTa < 3:121758/54‑1 (MQ=255) gTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACAtaa > 4:146550/1‑135 (MQ=255) | ATCTCCGGCTACCGCGCTGTAAAAAGGACGGCCCGCCAAAATGCCGAGCATGAGGCGAATCGTTGTACCTGAATTTCCGACATCTAAAAGGCTTTCTGGCTCACTCAGGGAATCGATTCCATTTCCGTGAATCACTACATTGCTGCCGTTTTGCTCAATTTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCCGCTCCCGGCAGAAAGTTTTTCACAGTTGTTGTGCCCTTCGCTAGCGCGCCAAACATGA > CP006881/2186762‑2187024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |