Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,186,966	C→T	A45A (GCG→GCA)	U712_10955 ←	3‑phosphoshikimate 1‑carboxyvinyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,186,966	0	C	T	100.0%	252.5 / NA	80	A45A (GCG→GCA)	U712_10955	3‑phosphoshikimate 1‑carboxyvinyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/41);  total (39/41)

AATTTCCGACATCTAAAAGGCTTTCTGGCTCACTCAGGGAATCGATTCCATTTCCGTGAATCACTACATTGCTGCCGTTTTGCTCAATTTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCCGCTCCCGGCAGAAAGTTTTTCACAGTTGTTGTGCCCTTCGCTAGCGCGCCAAACATGACGGAACGGTGAGAAATGGATTTATCACCAGGAATATGTATTTCTCCGTTTAAGGCCTGCACCTTTTCTCTTTT  >  CP006881/2186833‑2187097                                                                                                                                      |                                                                                                                                    aaTTTCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTc                                                                                                                                 <  1:138213/138‑1 (MQ=255)   tttCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCg                                                                                                                              >  7:158916/1‑139 (MQ=255)     tCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCgg                                                                                                                             >  7:211433/1‑138 (MQ=255)     tCCGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCgg                                                                                                                             >  4:112831/1‑138 (MQ=255)       cGACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCgg                                                                                                                             >  3:37058/1‑136 (MQ=255)        gACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGGACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa                                                                                                                         <  6:173554/139‑1 (MQ=255)        gACATCTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa                                                                                                                         <  8:211433/139‑1 (MQ=255)             cTAAAAGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAATGtt                                                                                                                    >  7:47262/1‑139 (MQ=255)                  aGGCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGtttttaa                                                                                                               <  8:158916/139‑3 (MQ=255)                    gCTTTCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTaact                                                                                                             <  1:114363/139‑2 (MQ=255)                       ttCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa                                                                                                                         <  3:100418/124‑1 (MQ=255)                       ttCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgtt                                                                                                          >  4:379438/1‑139 (MQ=255)                       ttCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCAATTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa                                                                                                                         >  4:100418/1‑124 (MQ=255)                        tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGtttttaa                                                                                                               <  4:187752/133‑3 (MQ=255)                        tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGtttttaa                                                                                                               >  3:187752/1‑131 (MQ=255)                        tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgttg                                                                                                         >  1:152939/1‑139 (MQ=255)                        tCTGGCTCTTTCAGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgttg                                                                                                         >  5:178919/1‑139 (MQ=255)                            gctctttcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTgttgtt                                                                                                       <  8:182493/131‑1 (MQ=255)                               ctttcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGcc                                                                                                  >  4:142062/4‑139 (MQ=255)                               ctttcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGcc                                                                                                  >  8:337236/4‑139 (MQ=255)                                  tcaGGGCATCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGcc                                                                                                  <  3:112831/136‑1 (MQ=255)                                          tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa                                                                                                                         <  1:88299/105‑1 (MQ=255)                                          tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGa                                                                                                                         >  2:88299/1‑105 (MQ=255)                                          tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcg                                                                                       <  8:266131/139‑1 (MQ=255)                                          tCGATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcg                                                                                       >  2:285922/1‑139 (MQ=255)                                            gATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcg                                                                                     <  1:389875/139‑1 (MQ=255)                                            gATTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcg                                                                                     <  1:194218/139‑1 (MQ=255)                                             aTTCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcgc                                                                                    >  6:428019/1‑139 (MQ=255)                                              ttCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGcc                                                                                   <  8:115960/139‑1 (MQ=255)                                              ttCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGcc                                                                                   <  3:144481/139‑1 (MQ=255)                                              ttCCTTTTCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGcc                                                                                   <  6:346565/139‑1 (MQ=255)                                                  ttttCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATATGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGACTGCAGCTAGCGCGCCaaa                                                                                >  8:406894/2‑138 (MQ=255)                                                   tttCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCTGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCatcc                                                                               >  5:237749/1‑135 (MQ=255)                                                    ttCCGTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACa                                                                              >  7:15953/1‑138 (MQ=255)                                                        gTGAATCACGACATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACAtaa                                                                           >  4:146550/1‑135 (MQ=255)                                                               acgaCATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGt                                                                  <  5:428019/136‑1 (MQ=255)                                                               acgaCATCGCTGCTGCTTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGATCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCTCCAAACATAACAGAGCGGt                                                                  <  7:406894/136‑1 (MQ=255)                                                                      cgctgctgctTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGAGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTCTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACATAGCGGTGAGAAAt                                                           >  2:109452/2‑139 (MQ=255)                                                                       gctgctgctTTGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAAt                                                           <  8:259418/138‑1 (MQ=255)                                                                             gctttGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTa                                                    >  4:379699/3‑139 (MQ=255)                                                                                 tGCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAc                                                >  8:185996/1‑139 (MQ=255)                                                                                  gCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAc                                                <  7:2929/138‑1 (MQ=255)                                                                                  gCTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAc                                                <  2:152939/138‑1 (MQ=255)                                                                                   cTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAccg                                              >  1:121878/1‑138 (MQ=255)                                                                                   cTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAccg                                              >  1:336678/1‑138 (MQ=255)                                                                                   cTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAccg                                              >  6:379394/1‑138 (MQ=255)                                                                                   cTCAATGTGAACACCCATTTTTCTAAAGCAATCGATCGGGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTGGCGCGCCAAACATAACAGACCGGTGAGAAATGGATTTATCAccg                                              >  4:87160/1‑138 (MQ=255)                                                                                      aaTGTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCAccgg                                             <  3:379699/137‑3 (MQ=255)                                                                                        tgtGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTaac                                                                                                              >  1:392323/3‑70 (MQ=255)                                                                                        tgtGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTaac                                                                                                              <  2:392323/68‑1 (MQ=255)                                                                                        tgtGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCTGTGAGAAATGGATTTATCACCGGGAat                                         <  4:37058/137‑1 (MQ=255)                                                                                        tgtGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGaa                                          >  4:67183/3‑138 (MQ=255)                                                                                        tgtGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAat                                         <  1:5478/137‑1 (MQ=255)                                                                                        tgtGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAat                                         <  7:445822/137‑1 (MQ=255)                                                                                             acacCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTa                                    >  3:24559/1‑139 (MQ=255)                                                                                              gacCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATAGATTTATCACCGGGAATATGTAt                                   <  4:157610/138‑1 (MQ=255)                                                                                                cccATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTAttt                                 >  8:369230/1‑139 (MQ=255)                                                                                                 ccATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTtc                                <  4:24559/139‑1 (MQ=255)                                                                                                 ccATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTtc                                <  7:369230/139‑1 (MQ=255)                                                                                                  cATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTtct                               <  8:305091/139‑1 (MQ=255)                                                                                                  cATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTtct                               >  8:135490/1‑139 (MQ=255)                                                                                                  cATTTTTCTAAAGCAATCGATAGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTtc                                >  4:256550/1‑138 (MQ=255)                                                                                                   aTTTTTCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTtctc                              <  7:135490/139‑1 (MQ=255)                                                                                                    tttttCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcg                                                                                     >  4:46672/1‑83 (MQ=255)                                                                                                    tttttCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAgcgcg                                                                                     <  3:46672/83‑1 (MQ=255)                                                                                                        tCTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTccatg                          >  8:108382/1‑135 (MQ=255)                                                                                                         cTAAAGGAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTccatgt                         <  4:222452/138‑5 (MQ=255)                                                                                                         cTAAAGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTccatgt                         <  3:295379/138‑5 (MQ=255)                                                                                                           aaaGCAATCTATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGt                                                                  >  8:219414/1‑95 (MQ=255)                                                                                                           aaaGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGt                                                                  <  7:219414/95‑1 (MQ=255)                                                                                                           aaaGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAg                      >  8:411205/1‑139 (MQ=255)                                                                                                             aGCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAggt                    <  7:185996/139‑2 (MQ=255)                                                                                                              gCAATCGATCGTGCTCAGACAATCTGCTCCCGGCAGAATGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAggtc                   <  8:47262/139‑3 (MQ=255)                                                                                                                attcgatccTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTTCCTGCCGCTAGCGCGACAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTg                 <  1:109452/137‑1 (MQ=255)                                                                                                                aaTCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTg                 <  3:67183/139‑1 (MQ=255)                                                                                                                aaTCGATCGTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTg                 <  3:20035/139‑1 (MQ=255)                                                                                                                  tcgatcgTGCTCAGACAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCa               >  3:387003/1‑139 (MQ=255)                                                                                                                                aCAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGa                                           <  6:293086/97‑1 (MQ=255)                                                                                                                                aCAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGa                                           >  5:293086/1‑97 (MQ=255)                                                                                                                                aCAATCTGCTCCCGGCAGAAAGTTTTTAACTGTTGTTGTGCCTGCCGCTAGCGCGCCAAACATAACAGAGCGGTGAGAAATGGATTTATCACCGGGAATATGTATTTCTCCATGTAAGGTCTGCACCTTATCTCgttt  >  7:402514/1‑138 (MQ=255)                                                                                                                                      |                                                                                                                                    AATTTCCGACATCTAAAAGGCTTTCTGGCTCACTCAGGGAATCGATTCCATTTCCGTGAATCACTACATTGCTGCCGTTTTGCTCAATTTGAACACCCATTTTTCTAAAGCAATCGATCGTGCTCAGACAATCCGCTCCCGGCAGAAAGTTTTTCACAGTTGTTGTGCCCTTCGCTAGCGCGCCAAACATGACGGAACGGTGAGAAATGGATTTATCACCAGGAATATGTATTTCTCCGTTTAAGGCCTGCACCTTTTCTCTTTT  >  CP006881/2186833‑2187097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑