Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,173,121 G→A I209I (ATC→ATT U712_10870 ← Bifunctional protein BirA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,173,1210GA98.5% 206.9 / ‑4.7 68I209I (ATC→ATTU712_10870Bifunctional protein BirA
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (35/32);  total (36/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01

AAAGCAAAGTAAAATATGCTGGATGACGCCGGCCCGGTCAATTTTTTCTCCGGAAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAGTTCATCTGGAAAATCATCAGACTGCTGGTTAACGTTAATGCCGATCCCGATGATAACTGACCGTACGCGGTCTTCCTCGGCCTGCATTTCGGTTAAGATGCCGACTGTTTTTTTTCCGTTAATTAAAATATCATTAGGCCATTTAATATCCGTTTGGATGCCTGCTGCCGCTTCTATTCCCT  >  CP006881/2172986‑2173254
                                                                                                                                       |                                                                                                                                     
aaagcatagTAAAATATGCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCaat                                                                                                                                     <  4:18886/138‑1 (MQ=255)
 aagcatagTAAAATATGCTGGATGACGCCTGCCCGATCTATTTTTTCACCAGCAGATTTGCTGATGATTGTCGCGATGTCCTTCATTTCAAATGGAAAATCATTATGCTGCTGGTTAACGTTAATGCCGATCCCaatga                                                                                                                                   <  6:227804/139‑1 (MQ=255)
    catagTAAAATATGCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCaatgatca                                                                                                                                <  8:185751/136‑3 (MQ=255)
       agTAAAATATGCTGGATGACGCCGGCCCGATCAATTTTTTCCCAAGCAGCTTGGCTGAGTCTTGTAGCGATGTCCTTAAATTAAAATTGAAAATCATTAGGATGCTTGTTAACGTTAATGCAGATCACAATGATCACt                                                                                                                              >  5:227804/1‑138 (MQ=255)
              tatGCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAc                                                                                                                      >  1:54923/1‑139 (MQ=255)
              tatGCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAc                                                                                                                      >  5:403864/1‑139 (MQ=255)
                tGCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcg                                                                                                                     <  3:82889/138‑1 (MQ=255)
                tGCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcg                                                                                                                     <  5:146907/138‑1 (MQ=255)
                 gCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcgcg                                                                                                                   >  3:187159/1‑139 (MQ=255)
                 gCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcgcg                                                                                                                   >  1:36398/1‑139 (MQ=255)
                 gCTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcgcg                                                                                                                   >  5:296281/1‑139 (MQ=255)
                 gCTGGATGACGCCGGCCCGATCAATTTTTTCCCCACCAGCTTGGCTGAGGCTTGTCGCGATTTCCTTCAATTCATCTGGAAAAACATTAGGCTGCTGGTTAACGTTAAGGCCGATCCCAATGATCACTTAACGGAcgcg                                                                                                                   >  4:82889/1‑139 (MQ=255)
                  cTGGATGACGCCGGCCCTATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcgcg                                                                                                                   <  1:256207/138‑1 (MQ=255)
                  cTGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTAcgcg                                                                                                                   <  4:360404/138‑1 (MQ=255)
                   tGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGt                                                                                                                 >  3:262514/1‑139 (MQ=255)
                   tGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGt                                                                                                                 >  3:217751/1‑139 (MQ=255)
                   tGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGt                                                                                                                 >  5:81155/1‑139 (MQ=255)
                   tGGATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTCAGGCTTGTCGCGATGACCTTCAAATCATCTGGAAAATCATTAGTCTGCTGGTTAACGTTAATGCCGATGCCAATTATCACTGAACGTACGCGGt                                                                                                                 >  5:145175/1‑139 (MQ=255)
                     gATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGt                                                                                                                 <  8:422467/137‑1 (MQ=255)
                     gATGACGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCGGGTTACCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCt                                                                                                               >  6:148001/1‑139 (MQ=255)
                         aCGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTctt                                                                                                           <  3:184080/139‑3 (MQ=255)
                          cGCCGGCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCttcttc                                                                                                          >  1:4726/1‑139 (MQ=255)
                               gCCCGATCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTGCTTCCGCCt                                                                                                     >  4:413945/1‑139 (MQ=255)
                                    atCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCttcttca                                                                                                         <  7:63730/129‑2 (MQ=255)
                                    atCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCttcttca                                                                                                         >  8:63730/2‑129 (MQ=255)
                                     tCAATTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTGTTCTTCAGCCTGCAttt                                                                                               >  7:170068/1‑139 (MQ=255)
                                       aaTTTTTTCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTc                                                                                              <  1:157359/138‑1 (MQ=255)
                                           ttttCCCCAGCAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGAGCACTGACCGGACGCGGTCTTCTTCAGCCTGCATTTCCGtt                                                                                          <  6:134102/138‑1 (MQ=255)
                                                   agcaGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCg                                                                                 >  7:137412/4‑139 (MQ=255)
                                                     caGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGAc                                                                               <  3:322248/138‑1 (MQ=255)
                                                     caGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGAc                                                                               <  6:73119/138‑1 (MQ=255)
                                                     caGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGAc                                                                               <  4:262514/138‑1 (MQ=255)
                                                                aGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCaat                                                                                                                                     <  6:127800/74‑1 (MQ=255)
                                                                aGGCTTGTCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCaat                                                                                                                                     >  5:127800/1‑74 (MQ=255)
                                                                       tCGCGATGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGttaat                                                             >  4:25163/1‑139 (MQ=255)
                                                                             tGTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATGACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAat                                                       <  8:256821/139‑1 (MQ=255)
                                                                              gTCCTTCAATTCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAata                                                      >  2:112803/1‑139 (MQ=255)
                                                                                    caattCATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCAttt                                                >  1:302026/4‑138 (MQ=255)
                                                                                         cATCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGcc                                            <  7:42391/138‑1 (MQ=255)
                                                                                          aTCTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCCGCCGGCCTTTCCGATAGGATACCGCCTGTGTTTTTTCCGTTAAGCAAAATATCATTTGGCCag                                          >  1:283486/1‑138 (MQ=255)
                                                                                            cTGGAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCAttt                                        >  2:312852/1‑139 (MQ=255)
                                                                                               gAAAATCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGCCTGTGTTTTTTCCGTTAATCAAAATTTCATTTGGCCATTTaa                                      >  7:311902/1‑138 (MQ=255)
                                                                                                aaaaTCATTAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAata                                    <  6:403864/139‑1 (MQ=255)
                                                                                                   atcattAGGCTGCTGGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATcc                                 <  2:4726/139‑1 (MQ=255)
                                                                                                      attaggctgctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGt                               <  8:317489/132‑1 (MQ=255)
                                                                                                          ggctgctgGTTAACGTTATTGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATTCCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGa                          <  6:145175/137‑1 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTc                                                                                              <  2:132795/66‑1 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTc                                                                                              >  1:132795/1‑66 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGc                                             >  7:269824/1‑115 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGc                                             <  8:269824/115‑1 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCct                     <  1:228886/139‑1 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCct                     >  2:24451/1‑139 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCct                     >  2:20125/1‑139 (MQ=255)
                                                                                                               ctgGTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATAATTTGGCCATTTAATATCCTTTTGGATGCct                     >  7:148667/1‑139 (MQ=255)
                                                                                                                  gTTAACGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCctgct                  <  6:81155/139‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCct                     <  7:16554/133‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCct                     >  8:16554/1‑133 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCtgctgc                <  8:137412/138‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCtgctgc                <  3:15395/138‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCtgctgc                <  1:112803/138‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCtgctgc                <  7:205954/138‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCtgctgc                <  2:36398/138‑1 (MQ=255)
                                                                                                                     aaCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCtgctgc                <  4:217751/138‑1 (MQ=255)
                                                                                                                      aCGTTAATGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCTGCTGcct              <  8:135781/139‑2 (MQ=255)
                                                                                                                            aTGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGGATTTGCGTTATGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCAGTTGGCCATATAATATCCGTTTGGTTTCCTGCTGCctctgcg         >  4:262231/1‑135 (MQ=255)
                                                                                                                            aTGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAatat                                   <  6:239164/112‑1 (MQ=255)
                                                                                                                            aTGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAatat                                   >  5:239164/1‑112 (MQ=255)
                                                                                                                            aTGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCTGCTGCCTCTTCTa        <  1:312852/139‑1 (MQ=255)
                                                                                                                            aTGCCGATCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCTGCTGCCTCTTCTa        >  5:207600/1‑139 (MQ=255)
                                                                                                                                  aTCCCGATGATAACTGACCGTACGCGGTCTTCCTCGGCCTGCATTTCGGTTAAGATGCCGACTGTTTTTTTTCCGTTAATTAAAATATCATTAGGCCATTTAATATCCGTTTGGATGCCTGCTGCCGATTGGATTCCCt  >  7:255523/1‑139 (MQ=255)
                                                                                                                                  aTCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGCCTGTTTTTTTTCCGTTAATCAAAATATCATGTGGCCATTTAATATCCGTTTGGATGCCTGCTGCCTCTTCGATTCCCt  >  2:152074/1‑139 (MQ=255)
                                                                                                                                  aTCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCTGCTGCCTCTTCTATTCCCt  >  8:309226/1‑139 (MQ=255)
                                                                                                                                  aTCCCAATGATCACTGAACGTACGCGGTCTTCTTCAGCCTGCATTTCCGTTAGGATACCGACTGTTTTTTTTCCGTTAATCAAAATATCATTTGGCCATTTAATATCCGTTTGGATGCCTGCTGCCTCTTCTATTCCCt  >  2:51337/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                     
AAAGCAAAGTAAAATATGCTGGATGACGCCGGCCCGGTCAATTTTTTCTCCGGAAGCTTGGCTGAGGCTTGTCGCGATGTCCTTCAGTTCATCTGGAAAATCATCAGACTGCTGGTTAACGTTAATGCCGATCCCGATGATAACTGACCGTACGCGGTCTTCCTCGGCCTGCATTTCGGTTAAGATGCCGACTGTTTTTTTTCCGTTAATTAAAATATCATTAGGCCATTTAATATCCGTTTGGATGCCTGCTGCCGCTTCTATTCCCT  >  CP006881/2172986‑2173254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: