Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,195,775	2 bp→GA	coding (105‑106/384 nt)	U712_11000 ←	Chorismate mutase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,195,775	0	T	G	100.0%	281.5 / NA	86	K36H (AAA→CAT)	U712_11000	Chorismate mutase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (47/39);  total (47/39)
*	CP006881	2,195,776	0	G	A	100.0%	274.1 / NA	86	N35N (AAC→AAT)	U712_11000	Chorismate mutase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/39);  total (47/39)

TTTCCTGCATACAGGTTACCGGCACATACTGCCATCCTGAAAGCTCACGGACAGCTTTTGCCGGGAAAACGGAGTGCAAATCAGGTGTCGCCGAAAGAAGCATTTGAACAACATCTTCCGGTTTTGTTTTGTTTTCTTCTATGATTTTCTCTAACAGCTGTTTTGTTTTTTGTAAAATTTCTTCTTCAGTATCTCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGT  >  CP006881/2195646‑2195905                                                                                                                                  ||                                                                                                                                  tttCCTGCATACATGTTACCGGTACATACTGCCATCCTGAAAGCTAGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTttcttc                                                                                                                           >  1:390730/1‑139 (MQ=255)        cATACATGTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    >  6:134021/1‑139 (MQ=255)        cATACATGTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    >  5:38809/1‑139 (MQ=255)        cATACATGTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    <  4:136726/139‑1 (MQ=255)        cATACATGTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    <  3:293422/139‑1 (MQ=255)             atgTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTtctc                                                                                                               >  5:361422/3‑139 (MQ=255)             atgTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTtctc                                                                                                               >  2:105490/3‑139 (MQ=255)              tgTTACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTctct                                                                                                              <  3:142533/138‑1 (MQ=255)                ttACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCTAATCAGGTGTAGCCGACAGAAGCATTTGACCAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTaa                                                                                                            >  4:59128/1‑139 (MQ=255)                ttACCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTaa                                                                                                            <  2:160555/139‑1 (MQ=255)                  aCCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTTTGATTTTCTTCTATGAtt                                                                                                                    >  7:379941/1‑129 (MQ=255)                  aCCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    <  8:379941/129‑1 (MQ=255)                  aCCGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTaa                                                                                                            >  5:412547/1‑137 (MQ=255)                   ccGGTACATACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGACGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAg                                                                                                         <  6:176726/139‑1 (MQ=255)                       tacaTACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgt                                                                                                     >  5:317818/2‑139 (MQ=255)                       tacaTACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGAGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgt                                                                                                     >  7:193071/2‑139 (MQ=255)                          aTACTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgttta                                                                                                  >  1:80970/1‑138 (MQ=255)                            aCTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAg                                                                                                         <  5:298269/130‑1 (MQ=255)                            aCTGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTGCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAg                                                                                                         >  6:298269/1‑130 (MQ=255)                              tGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgtttagttt                                                                                              >  2:258661/1‑139 (MQ=255)                              tGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgtttagttt                                                                                              >  4:218253/1‑139 (MQ=255)                              tGCCATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCtgtttagttt                                                                                              >  6:174154/1‑139 (MQ=255)                                ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                            >  7:252753/1‑139 (MQ=255)                                ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                            >  7:231128/1‑139 (MQ=255)                                ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                            >  4:218449/1‑139 (MQ=255)                                ccATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGttttt                                                                                            >  1:215938/1‑139 (MQ=255)                                 cATCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGtttttt                                                                                           >  1:381114/1‑139 (MQ=255)                                   tCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTg                                                                                          >  7:419433/1‑138 (MQ=255)                                   tCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTg                                                                                          >  1:362586/1‑138 (MQ=255)                                   tCCTGAAAGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTg                                                                                          >  4:116937/1‑138 (MQ=255)                                        aaaGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTaaa                                                                                      <  3:116937/137‑1 (MQ=255)                                          aGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    >  3:190632/1‑105 (MQ=255)                                          aGCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGAtt                                                                                                                    <  4:190632/105‑1 (MQ=255)                                           gCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttc                                                                                 <  3:378098/139‑1 (MQ=255)                                           gCTCGCGAACAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttc                                                                                 <  2:80970/139‑1 (MQ=255)                                               gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTATAATttcttct                                                                             >  3:382138/5‑139 (MQ=255)                                               gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttcttct                                                                             >  7:332636/5‑139 (MQ=255)                                               gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttcttct                                                                             >  2:106717/5‑139 (MQ=255)                                               gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttctt                                                                               <  4:362523/133‑1 (MQ=255)                                               gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttctt                                                                               <  6:361422/133‑1 (MQ=255)                                               gcgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCAGACAGAAGCATTTGAACATCATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttctt                                                                               <  1:136420/133‑1 (MQ=255)                                                cgaaCAGCTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATttcttct                                                                             >  8:4786/4‑138 (MQ=255)                                                       cTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                     >  4:37295/1‑139 (MQ=255)                                                       cTTTTGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                     <  3:218449/139‑1 (MQ=255)                                                        gtttGCCGGGAAACCAGCGTGCAATTCAGGGGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTGTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtcc                                                                    <  8:208839/138‑2 (MQ=255)                                                           tGCCGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCg                                                                  <  5:185776/138‑1 (MQ=255)                                                             ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGtt                                                                <  8:252753/138‑1 (MQ=255)                                                             ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                               <  8:332636/139‑1 (MQ=255)                                                             ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                               <  7:6153/139‑1 (MQ=255)                                                             ccGGGAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                               <  2:390730/139‑1 (MQ=255)                                                                ggAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAAc                                                            <  2:381114/139‑1 (MQ=255)                                                                 gAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACt                                                           >  7:23718/1‑139 (MQ=255)                                                                 gAAAACAGCGTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACt                                                           >  6:164023/1‑139 (MQ=255)                                                                     acagcgTGAAAATCAGGTTTAGCCGACAGAAGCATTTTAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACATCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                       <  4:382138/134‑1 (MQ=255)                                                                         cgTGCAAATCAGGTGTAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTg                                                    >  4:372963/2‑138 (MQ=255)                                                                                     gtgtAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                       <  4:90606/123‑1 (MQ=255)                                                                                     gtgtAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                       >  3:90606/1‑123 (MQ=255)                                                                                     gtgtAGCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattcc                                       >  7:308017/1‑139 (MQ=255)                                                                                       gtagCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                       <  4:298885/118‑1 (MQ=255)                                                                                       gtagCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAg                                                       >  3:298885/4‑121 (MQ=255)                                                                                        tagCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACATCTGTTTAGTTTTTTTTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgagaattcagc                                     >  7:415987/3‑138 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  >  7:223007/1‑139 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  >  4:99286/1‑139 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  >  6:414423/1‑139 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  1:258661/139‑1 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  5:364124/139‑1 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  >  2:235658/1‑139 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  5:164023/139‑1 (MQ=255)                                                                                          gCCGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  5:134021/139‑1 (MQ=255)                                                                                          gCCGACAGAAGCATGTGAACAACATCTTCCGGTTTTGTATGATTTGCTTCTCTGATCTGCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccccgaaatccgcgaa                                  <  8:103475/139‑1 (MQ=255)                                                                                          gCCGAAAGAAGCATATGAACAACATCATCCGGGTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGATGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  8:193071/139‑1 (MQ=255)                                                                                           ccGACAGAAGCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTTAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  3:372963/138‑1 (MQ=255)                                                                                             gacagaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAatca                               <  3:218253/136‑1 (MQ=255)                                                                                               cagaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAatcat                              >  2:87874/2‑138 (MQ=255)                                                                                                agaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                     <  7:15629/98‑1 (MQ=255)                                                                                                agaagCATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTAtc                                                                     >  8:15629/1‑98 (MQ=255)                                                                                                     cATTTGAACAACATCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCATCTTCAGTATCCCGTTCAACTGTAGTTGCTCAGCGAATACAGCGAATCATCaagatc                       >  6:431359/1‑138 (MQ=255)                                                                                                                caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                               <  7:79379/88‑1 (MQ=255)                                                                                                                caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTc                                                               >  8:79379/1‑88 (MQ=255)                                                                                                                caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  >  8:289123/1‑117 (MQ=255)                                                                                                                caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCtccgcgaattccgcgaa                                  <  7:289123/117‑1 (MQ=255)                                                                                                                caTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAAt            >  4:366308/1‑139 (MQ=255)                                                                                                                 aTCTTCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATc           <  3:37295/139‑1 (MQ=255)                                                                                                                     tCCGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCa       >  7:29015/1‑139 (MQ=255)                                                                                                                       cGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCAt      <  2:362586/138‑1 (MQ=255)                                                                                                                       cGGTTTTGTATGATTTTCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCAt      <  6:390229/138‑1 (MQ=255)                                                                                                                          ttttgtatgattttCTTCTATGATTTTCTCTAACAGCTGTTTAGTTTTTTGTAAAATTTCTTCTTCAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGt  >  1:302167/1‑139 (MQ=255)                                                                                                                                  ||                                                                                                                                  TTTCCTGCATACAGGTTACCGGCACATACTGCCATCCTGAAAGCTCACGGACAGCTTTTGCCGGGAAAACGGAGTGCAAATCAGGTGTCGCCGAAAGAAGCATTTGAACAACATCTTCCGGTTTTGTTTTGTTTTCTTCTATGATTTTCTCTAACAGCTGTTTTGTTTTTTGTAAAATTTCTTCTTCAGTATCTCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGT  >  CP006881/2195646‑2195905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑